View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9884_high_34 (Length: 251)
Name: NF9884_high_34
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 54778702 - 54778485
Alignment:
| Q |
19 |
acaaattcctccgcaatttaaaatttgttgtttagaatcacaccattccagaaatcaaactgtcgatcacaagttctgttttctttttcaaccaacttta |
118 |
Q |
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| T |
54778702 |
acaaattcctccgcaatttaaaatttgttgtttagaatcac--cattccagaaatcaaactgtcgatcacaagttctgttttctttttcaaccaacttta |
54778605 |
T |
|
| Q |
119 |
tttattttcacctattcatattctgtgaaagtgaccttttttagggtatgtggattggtgttatagatgggaatgtgatatctattttttaaaaattaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54778604 |
tttattttcacctattcatattctgtgaaagtgaccttttttagggtatgtggattggtgttatagatgggaatgtgatatctattttttaaaaattaac |
54778505 |
T |
|
| Q |
219 |
tagcatattccatccaccct |
238 |
Q |
| |
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|||||||||||||||||||| |
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| T |
54778504 |
tagcatattccatccaccct |
54778485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 54790443 - 54790660
Alignment:
| Q |
19 |
acaaattcctccgcaatttaaaatttgttgtttagaatcacaccattccagaaatcaaactgtcgatcacaagttctgttttctttttcaaccaacttta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
54790443 |
acaaattcctccgcaatttaaaatttgttgtttagaatcac--cattccagaaatcaaactgtcgatcacaagttctgttttccttttcaaccaacttta |
54790540 |
T |
|
| Q |
119 |
tttattttcacctattcatattctgtgaaagtgaccttttttagggtatgtggattggtgttatagatgggaatgtgatatctattttttaaaaattaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54790541 |
tttattttcacctattcatattctgtgaaagtgaccttttttagggtatgtggattggtgttatagatgggaatgtgatatctattttttaaaaattaac |
54790640 |
T |
|
| Q |
219 |
tagcatattccatccaccct |
238 |
Q |
| |
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|||||||||||||||||||| |
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| T |
54790641 |
tagcatattccatccaccct |
54790660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 52283105 - 52283314
Alignment:
| Q |
19 |
acaaattcctccgcaatttaaaatttgttgtttagaatcacaccattccagaaatcaaactgtcgatcacaagttctgttttctttttcaaccaacttta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| |||| || |||||||||||||||||||||||||||||||| |
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| T |
52283105 |
acaaattcctccgcaatttaaaatttgttgtttagaatcac--cattccaaaagtcaaattgtcaatgacaagttctgttttctttttcaaccaacttta |
52283202 |
T |
|
| Q |
119 |
tttattttcacctattcatattctgtgaaagtgaccttttttagggtatgtggattggtgttatagatgggaatgtgatatctattttttaaaaattaac |
218 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||| |||||| ||||||||| |
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| T |
52283203 |
tttattttaacctattcatattctgtgaaagtgtccttttttagggtatgtggattggtgttatagaatggaatgggatatctctttttttaaaattaac |
52283302 |
T |
|
| Q |
219 |
tagcatattcca |
230 |
Q |
| |
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|||||||||| |
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|
| T |
52283303 |
ctgcatattcca |
52283314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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