View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9884_high_35 (Length: 251)

Name: NF9884_high_35
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9884_high_35
NF9884_high_35
[»] chr8 (2 HSPs)
chr8 (144-242)||(21582604-21582701)
chr8 (1-83)||(21583042-21583124)
[»] chr6 (2 HSPs)
chr6 (144-242)||(15886647-15886744)
chr6 (13-83)||(15886518-15886588)
[»] chr2 (2 HSPs)
chr2 (13-83)||(26247848-26247918)
chr2 (143-242)||(26247977-26248075)
[»] chr5 (1 HSPs)
chr5 (177-242)||(593009-593074)


Alignment Details
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 242
Target Start/End: Complemental strand, 21582701 - 21582604
Alignment:
Q  144 cacatttgcaaaaaattacgaaaaacactacccccatcataatccaactccatggccactatcttagttttggttccatttagttcatattccctttgc 242  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  21582701 cacatttgcaaaaaattacgaaaaacactaaccc-atcataatccaactccatggccaccatcttagttttggctccatttcgttcatattccctttgc 21582604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 21583124 - 21583042
Alignment:
Q  1 ttttcggtcttcccggcagcaacaaaaacatcaagttcctcagcatattaaccaaaaagagtgaccttaaatttaaacctaac 83  Q
    |||||| ||| |||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||    
T  21583124 ttttcgatctccccggcagcaacaaaaacatcaagttcctcagtatattgtccaaaaagagtgaccttaaatttaaacctaac 21583042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 242
Target Start/End: Original strand, 15886647 - 15886744
Alignment:
Q  144 cacatttgcaaaaaattacgaaaaacactacccccatcataatccaactccatggccactatcttagttttggttccatttagttcatattccctttgc 242  Q
    ||||||| ||||| |||| ||||||||| | ||| ||| |||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  15886647 cacattttcaaaatattatgaaaaacaccaaccc-atcgtaatccaattccatggccaccatcttagttttggctccatttagttcatattccctttgc 15886744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 15886518 - 15886588
Alignment:
Q  13 ccggcagcaacaaaaacatcaagttcctcagcatattaaccaaaaagagtgaccttaaatttaaacctaac 83  Q
    ||||||||||||||| ||| |||||||||||||||||  ||||| | ||||||||||||||||||||||||    
T  15886518 ccggcagcaacaaaagcattaagttcctcagcatattgtccaaatatagtgaccttaaatttaaacctaac 15886588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 26247848 - 26247918
Alignment:
Q  13 ccggcagcaacaaaaacatcaagttcctcagcatattaaccaaaaagagtgaccttaaatttaaacctaac 83  Q
    ||||||||||||||| ||| |||||| ||||||||||  ||||| ||||||||||||||||||||||||||    
T  26247848 ccggcagcaacaaaagcattaagttcatcagcatattgtccaaatagagtgaccttaaatttaaacctaac 26247918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 242
Target Start/End: Original strand, 26247977 - 26248075
Alignment:
Q  143 acacatttgcaaaaaattacgaaaaacactacccccatcataatccaactccatggccactatcttagttttggttccatttagttcatattccctttgc 242  Q
    |||||||| ||||| |||| ||||||||| | ||| ||| |||| ||| | ||||||||| ||||||||||| | ||||||| |||||||||||||||||    
T  26247977 acacattttcaaaatattatgaaaaacaccaaccc-atcgtaattcaatttcatggccaccatcttagtttttgctccatttcgttcatattccctttgc 26248075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 593074 - 593009
Alignment:
Q  177 ccatcataatccaactccatggccactatcttagttttggttccatttagttcatattccctttgc 242  Q
    |||||||||||||| || ||||| || ||||||||||||  || |||| |||||||||| ||||||    
T  593074 ccatcataatccaattcgatggctaccatcttagttttgaatcaatttcgttcatattctctttgc 593009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University