View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9884_high_39 (Length: 246)
Name: NF9884_high_39
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 45450638 - 45450863
Alignment:
| Q |
1 |
ttatgagttggccgagtataagaaccagttgtgttgcctcggaaaagaacnnnnnnnnnnnnnngttgtgtagcaagatattaataattcggttctaaat |
100 |
Q |
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| T |
45450638 |
ttatgaattggccgagtataagaaccagttgtgttgcctcggaaaagaactatatata------gttgtgtagcaagatattaataattcggttctaaat |
45450731 |
T |
|
| Q |
101 |
gagaagagataagctaccacgagttcaagtgattaggatataatgcaacaaaaggtcatgagatcgaatgcaattagttggatgcatgagacatcacagc |
200 |
Q |
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|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45450732 |
gagaagaggtaagctaccatgagttcaagtgattaggatataatgcaacaaaaggtcatgagatcgaatgcaattagttggatgcatgagacatcacagc |
45450831 |
T |
|
| Q |
201 |
cctatttaaagctgtaaaaaagtggtgtattt |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
45450832 |
cctatttaaagctgtaaaaaagtggtgtattt |
45450863 |
T |
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