View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9884_high_45 (Length: 239)
Name: NF9884_high_45
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_high_45 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 42 - 214
Target Start/End: Original strand, 11429533 - 11429705
Alignment:
| Q |
42 |
tatactatatacataatgattcatcaatttcatatttcacatacatttccaatccaaaaatcagttgcacaacttcaacgatattggaatgctgattctc |
141 |
Q |
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| T |
11429533 |
tatactatatacataatgattcatcaatttcatctttcacatacatttccaatcccaaaatcagttgaacaactttaacgatattggaatgctgattctc |
11429632 |
T |
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| Q |
142 |
atttattgtatatacttatttcctatagatacacatacagcattgttattccagcagaggataggatgtgtta |
214 |
Q |
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| T |
11429633 |
atttattgtatatacttatttcctatagatacacatacagcattgttattccagcagaggataggatgtgtta |
11429705 |
T |
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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 11422305 - 11422380
Alignment:
| Q |
42 |
tatactatatacataatgattcatcaatttcatatttcacatacatttccaatccaaaaatcagttgcacaacttca |
118 |
Q |
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|||| ||||||||| || ||||||||||||||| ||| |||||||||| |||||| ||||||| || ||||||||| |
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| T |
11422305 |
tatagtatatacatgat-attcatcaatttcatctttaacatacattttcaatcccaaaatcaattctacaacttca |
11422380 |
T |
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