View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9884_high_46 (Length: 239)
Name: NF9884_high_46
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_high_46 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14923539 - 14923761
Alignment:
| Q |
1 |
tttgttgatttccaaccaattcatcaacttacacttcttgaatgatttttgcatggctagtgatgcaacattttcctctaacattactttcatcttcttt |
100 |
Q |
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| T |
14923539 |
tttgttgatttccaaccaattcatcaacttacacttcttgaatgatttttgcatggctagtgatgcaacattttcctccaacattactttcatcttcttt |
14923638 |
T |
|
| Q |
101 |
tctttactcttagcttttcactttgctatggcagtccaagaacacaatttaacaaaagatgatgccaagaagaggagcgacgaggtagctacttcaacaa |
200 |
Q |
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| T |
14923639 |
tctttactcttagcttttcactttgctatggcagtccaagaacacactttaacaaaagatgatgccaagaagaggagcaacgaggtagctacttcaacaa |
14923738 |
T |
|
| Q |
201 |
acgaagaaagtgtacaaaatttg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
14923739 |
acgaagaaagtgtacaaaatttg |
14923761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14915048 - 14915270
Alignment:
| Q |
1 |
tttgttgatttccaaccaattcatcaacttacacttcttgaatgatttttgcatggctagtgatgcaacattttcctctaacattactttcatcttcttt |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14915048 |
tttgttgattttcaaccaattcatcaacttacacttcttgaatgatttttgcatggctagtgatgcaacattttcctccaacattactttcatcttcttt |
14915147 |
T |
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| Q |
101 |
tctttactcttagcttttcactttgctatggcagtccaagaacacaatttaacaaaagatgatgccaagaagaggagcgacgaggtagctacttcaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14915148 |
tctttactcttagcttttcactttgctatggcagtccaagaacacactttaacaaaagatgaggccaagaagaggagcgacgaggtagctacttcaacaa |
14915247 |
T |
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| Q |
201 |
acgaagaaagtgtacaaaatttg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
14915248 |
acgaagaaagtgtacaaaatttg |
14915270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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