View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9884_high_49 (Length: 223)

Name: NF9884_high_49
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9884_high_49
NF9884_high_49
[»] chr6 (4 HSPs)
chr6 (17-209)||(32822221-32822418)
chr6 (109-139)||(2258745-2258775)
chr6 (106-139)||(26001293-26001326)
chr6 (19-75)||(20397962-20398018)
[»] chr3 (2 HSPs)
chr3 (18-73)||(2457610-2457664)
chr3 (109-137)||(30498478-30498506)
[»] chr2 (3 HSPs)
chr2 (19-75)||(45271771-45271827)
chr2 (19-47)||(2676400-2676428)
chr2 (19-75)||(7972662-7972718)
[»] scaffold0883 (1 HSPs)
scaffold0883 (22-75)||(1323-1376)
[»] scaffold0095 (1 HSPs)
scaffold0095 (22-75)||(45116-45169)
[»] chr8 (1 HSPs)
chr8 (22-75)||(39406162-39406215)
[»] chr7 (3 HSPs)
chr7 (113-146)||(5801082-5801115)
chr7 (110-139)||(21696837-21696866)
chr7 (106-139)||(33858041-33858074)
[»] chr5 (1 HSPs)
chr5 (109-137)||(6538078-6538106)
[»] chr4 (1 HSPs)
chr4 (114-146)||(2494599-2494631)


Alignment Details
Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 32822221 - 32822418
Alignment:
Q  17 caaagggtaaaataggtaagaaaaaagtcagcacaaaccaatgtattctctttatatattatgat-aaaaatcacttgnnnnnnnnnnng---ttatttt 112  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||               |||||||    
T  32822221 caaagggtaaaataggtaagaaaaaagttagcacaaaccaatgtattctctttatatattgtgattaaaaatcacttgaaaaaaaaaaaaagtttatttt 32822320  T
Q  113 gatacaactatataaaagaga-ttttttagttacacaacctttattttctctctccctaaacaaattctattttttgagcttagattctgatttattt 209  Q
    |||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32822321 gatataactatataaaagagaattttttagttacaaaacctttattttctctctccctaaacaaattctattttttgagcttagattctgatttattt 32822418  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 139
Target Start/End: Complemental strand, 2258775 - 2258745
Alignment:
Q  109 ttttgatacaactatataaaagagatttttt 139  Q
    |||||||||||||||||||||||||||||||    
T  2258775 ttttgatacaactatataaaagagatttttt 2258745  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 26001326 - 26001293
Alignment:
Q  106 ttattttgatacaactatataaaagagatttttt 139  Q
    |||||| |||||||||||||||||||||||||||    
T  26001326 ttatttggatacaactatataaaagagatttttt 26001293  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 20397962 - 20398018
Alignment:
Q  19 aagggtaaaataggtaagaaaaaagtcagcacaaaccaatgtattctctttatatat 75  Q
    |||||||||||||| ||| ||||||||| || ||||  ||||||| |||||||||||    
T  20397962 aagggtaaaataggaaaggaaaaagtcatcaaaaactcatgtattttctttatatat 20398018  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 2457610 - 2457664
Alignment:
Q  18 aaagggtaaaataggtaagaaaaaagtcagcacaaaccaatgtattctctttatat 73  Q
    ||||||||||||||||||||||||||||| ||| |||  |||||||||||||||||    
T  2457610 aaagggtaaaataggtaagaaaaaagtcatcac-aactcatgtattctctttatat 2457664  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 137
Target Start/End: Complemental strand, 30498506 - 30498478
Alignment:
Q  109 ttttgatacaactatataaaagagatttt 137  Q
    |||||||||||||||||||||||||||||    
T  30498506 ttttgatacaactatataaaagagatttt 30498478  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 45271771 - 45271827
Alignment:
Q  19 aagggtaaaataggtaagaaaaaagtcagcacaaaccaatgtattctctttatatat 75  Q
    |||||||||||||||||||||||| | || ||||||  || ||||||||||||||||    
T  45271771 aagggtaaaataggtaagaaaaaatttagtacaaactcatttattctctttatatat 45271827  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 2676400 - 2676428
Alignment:
Q  19 aagggtaaaataggtaagaaaaaagtcag 47  Q
    |||||||||||||||||||||||||||||    
T  2676400 aagggtaaaataggtaagaaaaaagtcag 2676428  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 7972718 - 7972662
Alignment:
Q  19 aagggtaaaataggtaagaaaaaagtcagcacaaaccaatgtattctctttatatat 75  Q
    |||||||||||| |||||||| |||| ||  |||||  |||||||||||||||||||    
T  7972718 aagggtaaaataagtaagaaataagttagtccaaactcatgtattctctttatatat 7972662  T

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Target: scaffold0883 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0883
Description:

Target: scaffold0883; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 1323 - 1376
Alignment:
Q  22 ggtaaaataggtaagaaaaaagtcagcacaaaccaatgtattctctttatatat 75  Q
    ||||||||||||||||||||| |||   |||||  |||||||||||||||||||    
T  1323 ggtaaaataggtaagaaaaaaatcaattcaaacttatgtattctctttatatat 1376  T

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Target: scaffold0095 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 45116 - 45169
Alignment:
Q  22 ggtaaaataggtaagaaaaaagtcagcacaaaccaatgtattctctttatatat 75  Q
    ||||||||||||||||||||| |||   |||||  |||||||||||||||||||    
T  45116 ggtaaaataggtaagaaaaaaatcaattcaaacttatgtattctctttatatat 45169  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 39406162 - 39406215
Alignment:
Q  22 ggtaaaataggtaagaaaaaagtcagcacaaaccaatgtattctctttatatat 75  Q
    ||||||||||||||||||||| |||   |||||  |||||||||||||||||||    
T  39406162 ggtaaaataggtaagaaaaaaatcaattcaaacttatgtattctctttatatat 39406215  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 5801115 - 5801082
Alignment:
Q  113 gatacaactatataaaagagattttttagttaca 146  Q
    ||||||||||||||||||||||||||| ||||||    
T  5801115 gatacaactatataaaagagatttttttgttaca 5801082  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 139
Target Start/End: Complemental strand, 21696866 - 21696837
Alignment:
Q  110 tttgatacaactatataaaagagatttttt 139  Q
    ||||||||||||||||||||||||||||||    
T  21696866 tttgatacaactatataaaagagatttttt 21696837  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 33858074 - 33858041
Alignment:
Q  106 ttattttgatacaactatataaaagagatttttt 139  Q
    |||||| |||||||||||||||||||||||||||    
T  33858074 ttatttggatacaactatataaaagagatttttt 33858041  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 137
Target Start/End: Complemental strand, 6538106 - 6538078
Alignment:
Q  109 ttttgatacaactatataaaagagatttt 137  Q
    |||||||||||||||||||||||||||||    
T  6538106 ttttgatacaactatataaaagagatttt 6538078  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 2494631 - 2494599
Alignment:
Q  114 atacaactatataaaagagattttttagttaca 146  Q
    |||||||||||||||||||||||||| ||||||    
T  2494631 atacaactatataaaagagatttttttgttaca 2494599  T

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