View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9884_high_5 (Length: 452)
Name: NF9884_high_5
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 43080221 - 43080596
Alignment:
| Q |
1 |
ttttaaaatgaaaaagtagttctaaacttcagcatactcgatcgtctcttggaatgtagatcatgtatatgcagtgtagggaaatgctcaatttatgtgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43080221 |
ttttaaaatgaaaaagtagttctaaacttcagcatactcgatcgtctcttggaatgtagatcatgtatatgcagtgtagggaaatgctcaatttatgtgc |
43080320 |
T |
|
| Q |
101 |
agaaatcaagtaatactagaaaccgggtatgtagagaacattagtatagtnnnnnnnnngaaatctaaaatgaatggggcgtcatggttgctatggttgc |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43080321 |
agaaatcaagtaatactagaaatcgggtatgtagagaacattagtatagtaaaaaaaaagaaatctaaaatgaatggggcgtcatggttgctatggttgc |
43080420 |
T |
|
| Q |
201 |
aagctgtaacttctattctaagactattggacaatcttactaatacaggtgaaatctgtttgttattacagaatagataaatatgggggacacacatgat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43080421 |
aagctgtaacttctattctaagactattggacaatcttactaatacaggtgaaatctgtatgttattacagaatagataaatatgggggacacacatgat |
43080520 |
T |
|
| Q |
301 |
cagtaatggctgagactgggaatcagaagggttggttggtattaccataaattagcaacacaaggtcaaaatcttg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43080521 |
cagtaatggctgagactgggaatcagaagggttggttggtattaccataaattagcaacacaaggtcaaaatcttg |
43080596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 380 - 436
Target Start/End: Original strand, 43080642 - 43080698
Alignment:
| Q |
380 |
aaatgtgagttaaaaatctcaaattaaatggaaaagtggatgcaagcaacatattag |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43080642 |
aaatgtgagttaaaaatctcaaattaaatggaaaagtggatgcaagcaacatattag |
43080698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University