View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9884_high_6 (Length: 441)
Name: NF9884_high_6
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 53598820 - 53598390
Alignment:
| Q |
1 |
tggcacatggaagcagcctttcatatcaactcaataactcttattt----tctaaactttaatcttgggcaagttgtgtgtcagaaagatgtgtcataan |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
53598820 |
tggcacatggaagcagcctttcatatcaacccaataactcttatttattttctaaactttaatcttgggcaagttgtgtgtcggaaagatgtgtcataat |
53598721 |
T |
|
| Q |
97 |
nnnnnnaaccattgttgtttaattaaatagatcgtttgcgaataattannnnnnnaatcataagatgtgtcataattattttttaaaattgtaaggatcg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53598720 |
ttttttaaccattgttgtttaattaaatagatcgtttgcgaataattatttttttaatcataagatgtgtcataattattttttaaaattgtaaggatcg |
53598621 |
T |
|
| Q |
197 |
attattttggtccatgaacacttcccaattgtagtattttgttacgacatgtgcacaagcacaactattgattttagtcttcattgacttccttgtacat |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53598620 |
attattttggtccatgaacacttcccaattgtagtattttgttact---------ctagcacaactattgattttagtcttcattgacttccttgtacat |
53598530 |
T |
|
| Q |
297 |
gacacgttgtcattttctagaacatactaaggtgggaactcgtcatataatgcagacaagaaaactcacgggcaaaacagagttatgattcacgggagaa |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53598529 |
gacacgttgtcattttctagaacatactaaggtgggaactcgtcatataatgcagacaagaaaactcacgggcaaaacagagttatgattcacgggagaa |
53598430 |
T |
|
| Q |
397 |
ccttcaattatgcaatcatccaacacaagtataatctctg |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53598429 |
ccttcaattatgcaatcatccaacacaagtataatctctg |
53598390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University