View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9884_high_9 (Length: 415)
Name: NF9884_high_9
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 13 - 398
Target Start/End: Complemental strand, 52423385 - 52423000
Alignment:
| Q |
13 |
cagagacgaatccccttcgaaataagagatagaaacaatctcccaataaagtagaaatcaaacacaccagcctgcaaagaaccaacagcgctgcacttta |
112 |
Q |
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| T |
52423385 |
cagagacgaatccccttcgaaataagagatagaaacaatctcccaataaagtagaaatcaaacacaccagcctgcaaagaaccaacagcgctgcacttta |
52423286 |
T |
|
| Q |
113 |
ttggagatttaggnnnnnnncactgacttggaaacttgtaatctaaggaactggaatagatgctaatctctatcaattttataataatttaactgatcaa |
212 |
Q |
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| T |
52423285 |
ttggagatttaggtttttttcactgacttggaaacttgtaatctaaggaactggaatagatgctaatctctatcaattttataataatttaaatgatcaa |
52423186 |
T |
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| Q |
213 |
tgattatgttgtcatcttctattcaaagaattggaagaagttgctctactcagacctacccagtatgatagaaaacttgaaacaaacttgcatttgaata |
312 |
Q |
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| T |
52423185 |
tgattatgttgtcatcttctattcacagaattggaagaagttgctctactcagacctacccagtatgatagaaaacttgaaacaaacttgcatttgaata |
52423086 |
T |
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| Q |
313 |
gattggttattagacctaagaggttggtgattaaattcgacccaatttttcgcattattaagaatttaaacaaaagcactcgtggg |
398 |
Q |
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| T |
52423085 |
gattggttattagacctaagaggttggtgattaaattcgacccaatttttcgcattattaagaatttaaacaaaagcactcgtggg |
52423000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 137 - 361
Target Start/End: Complemental strand, 42716166 - 42715940
Alignment:
| Q |
137 |
gacttggaaacttgtaatctaaggaactgga-atagatgctaatctctatcaattttataataatttaactgatcaatgattatgttgtcatcttctatt |
235 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||| || ||||||| |||||| | ||| |||||||||||||| | ||||||||||| |
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| T |
42716166 |
gacttggaaacttgtaatctaaggaattggagatagatgctaatcagtagcaattttttaataaatgaacagatcaatgattatgctttcatcttctata |
42716067 |
T |
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| Q |
236 |
caaagaat-tggaagaagttgctctactcagacctaccc-agtatgatagaaaacttgaaacaaacttgcatttgaatagattggttattagacctaaga |
333 |
Q |
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|||| || || |||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42716066 |
caaaaaaactgtaagaagtttctctactcagacctaccccagtatgatagagaacttgaaacaaacttgcttttgaatagattggttattagacctaaga |
42715967 |
T |
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| Q |
334 |
ggttggtgattaaattcgacccaatttt |
361 |
Q |
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| T |
42715966 |
ggttggtgattaaatt-gacccaatttt |
42715940 |
T |
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