View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9884_low_10 (Length: 433)
Name: NF9884_low_10
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_low_10 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Complemental strand, 28283834 - 28283417
Alignment:
| Q |
16 |
gaattgacgtcgctatctatgcaagaattggtagactgtgacaaagcgaatggtggatgcgaaggaggtagcgtacgaaaagctttagagtatatgaaga |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28283834 |
gaattgacgtcactatctatgcaagaattggtagactgtgacaaagcgaatggtggatgcgaaggaggtagcgtacgaaaagctttagagtatatgaaga |
28283735 |
T |
|
| Q |
116 |
ccaatggaatagcaaaagatgtggattatccttacacagaaaaagtgggtacatgccttagcaacagaaaagaccgtgctgcaaaaattgatggttatgt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
28283734 |
ccaatggaatagcaaaagatgtggattatccttacacagaaaaagtgggtacatgccttagcaacaaaaaagaccgtgctgcgaaaattgatggttatgt |
28283635 |
T |
|
| Q |
216 |
aatagtatcacccggcgaacaaaacctattagaagcagtggcagaacagccggttacagttgcaatcgcgattaacgatgacttcaagaaatatgaaagt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28283634 |
aatagtatcacccggcgaacaaaacctattagaagcagtggcacaacagccggttacagttgcaatcgcgattaacgatgacttcaagaaatatgaaagt |
28283535 |
T |
|
| Q |
316 |
ggaatatttggtagcggaccatgtggaccgaaggagtcgctcaatttttctcatgctgtcaccttaattggttatggagggagccggagaaataagtatt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28283534 |
ggaatatttggtagcggaccatgtggaccgaaggagtcgctcaatttttctcatgcagtcaccttaattggttatggagggagccgcagaaataagtatt |
28283435 |
T |
|
| Q |
416 |
ggttgattaagaattcct |
433 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
28283434 |
ggttgattaagaattcct |
28283417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 346
Target Start/End: Original strand, 28004703 - 28004733
Alignment:
| Q |
316 |
ggaatatttggtagcggaccatgtggaccga |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
28004703 |
ggaatatttggtagcggaccatgtggaccga |
28004733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University