View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9884_low_12 (Length: 428)
Name: NF9884_low_12
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 17 - 418
Target Start/End: Original strand, 44027782 - 44028172
Alignment:
| Q |
17 |
aacatcaaggcaagctggttctaaattctttaccaaaatggctgcaaaacggtttttcgatgattctaatcaagacaaagacaaaccaaatgacaaacgg |
116 |
Q |
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| T |
44027782 |
aacatcaaagcaagctggttctaaattctttaccaaaatggctgcaaaacggtttttcgatgattctaatcaagacaaagacaaaccaaatgacaaacgg |
44027881 |
T |
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| Q |
117 |
ataagaactacaacaataccttcttttgcttcgtatgtttttgttccttaaacaaattactagccaacccaatccaacccaatattcattcattctatca |
216 |
Q |
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| T |
44027882 |
ataagaactacaacaataccttcttttgcttcgtatgtttttgtttctcaaaccaattact----------acccaacccaatattcattcattctatca |
44027971 |
T |
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| Q |
217 |
tattctttcaattcattaattttagaaaactactctttgcttnnnnnnnncannnnnnnnatgttccaactttatatatagcttgattattaaatgttgc |
316 |
Q |
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| T |
44027972 |
tattctttcaattcattcattttagaaaactactctttgcttaaaaaaaaca-tttttttatgttccaactttatatatagcttgattattaaatgttgc |
44028070 |
T |
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| Q |
317 |
ataatatatatcctctactatacattaattactctcaattctcatgtggcagggtgataggagaagttgttatggtgaaaaacatgcaaaaccttttctc |
416 |
Q |
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| T |
44028071 |
ataatatatatcctctactatacattaattactctcaattctcatgtggcagggtgataggagaagttgttatggtgaaaaacatgcaaaaccttttctc |
44028170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 44018505 - 44018353
Alignment:
| Q |
17 |
aacatcaaggcaagctggttctaaattctttaccaaaatggctgcaaaacggtttttcgatgattctaatcaagacaaagacaaaccaaatgacaaacgg |
116 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| |||| ||||||||| |||||||||||||||||| |
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| T |
44018505 |
aacatcaaagcaagctggttctaaattctttaccaaaatggctgcaaaacgttttcttgatgattttaatgaagacaaagtcaaaccaaatgacaaacgc |
44018406 |
T |
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| Q |
117 |
ataagaactacaacaataccttcttttgcttcgtatgtttttgttccttaaac |
169 |
Q |
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| T |
44018405 |
atgagaactacgacaacatcttcttttgcttcgtatgtttttattccttaaac |
44018353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 340 - 418
Target Start/End: Complemental strand, 44018265 - 44018187
Alignment:
| Q |
340 |
attaattactctcaattctcatgtggcagggtgataggagaagttgttatggtgaaaaacatgcaaaaccttttctctg |
418 |
Q |
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| T |
44018265 |
attaattactctcaattctcatgtgacagggtaataggagaaattgttatggtgaaaaacatgcaaaatcttttctctg |
44018187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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