View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9884_low_15 (Length: 396)
Name: NF9884_low_15
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 83 - 365
Target Start/End: Original strand, 43416303 - 43416585
Alignment:
| Q |
83 |
ttataagagaatatgagtcaacaaaaattgatgtattcttctaaagaaaagcaaaagtcgacggttcttagcttcccaattgcatggccaattacatgca |
182 |
Q |
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| T |
43416303 |
ttataagagaatatgagtcaacaaaaattgatgtattcttctaaagaaaagcaaaagtcgacggttcttagcttcccaattgcatggccaattacatgca |
43416402 |
T |
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| Q |
183 |
acacctcctcaagtgctacattcttgaatannnnnnnactctagaaactgtagtaagatatagtgcacatagaataacaaacaggggaataatcattcat |
282 |
Q |
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| T |
43416403 |
acacctcctcaagtgctacattcttgaatatttttttactctagaaactgtagtaagatatagtgcacatagaataacaaacaggggaataaccattcat |
43416502 |
T |
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| Q |
283 |
gtaaccaaaagaggaaagaaaaataagagggaaaactttcaatgattgacataaaatttttgtattgcatctctgtgctcctc |
365 |
Q |
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| T |
43416503 |
gtaaccaaaagaggaaagaaaaataagagggaaaactttcaatgattgacataaaatttttgtattgcatctcagtggtcctc |
43416585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 220 - 354
Target Start/End: Original strand, 43401755 - 43401891
Alignment:
| Q |
220 |
actctagaaactgtagtaagatatagtgcacatagaataacaaacaggggaataatcattcatgtaaccaaaagagg--aaagaaaaataagagggaaaa |
317 |
Q |
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| T |
43401755 |
actctataaactatagtaagatatggtgcacatagaataacaaagaggggaataatcaatcatgtaaccaaaagagggaaaaaaaatataagagggaaaa |
43401854 |
T |
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| Q |
318 |
ctttcaatgattgacataaaatttttgtattgcatct |
354 |
Q |
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| T |
43401855 |
ttttcaatgattgacataagaattttgcactgcatct |
43401891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 43416216 - 43416283
Alignment:
| Q |
20 |
actatgaaacatcaacaccggacacagacacgcatataacgctttcaatctgaaatgttagtgttata |
87 |
Q |
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| T |
43416216 |
actatgaaacatcaacaccggacacagacacgcatataacgctttcaatctgaaatgttagtgctata |
43416283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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