View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9884_low_17 (Length: 378)
Name: NF9884_low_17
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 21 - 363
Target Start/End: Complemental strand, 14883089 - 14882747
Alignment:
| Q |
21 |
atagggaatttgagtaacatgcatttacttgcattgtatcataacaagttgcacggtgctttgcctaaagagattggaaggcttggaaagttggaaattt |
120 |
Q |
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| T |
14883089 |
ataggtaatttgagtaacatgcatttacttgcattgtatcataacaagttgcatggtgctttgcctaaagagattggaaggcttggaaagttggaaattt |
14882990 |
T |
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| Q |
121 |
tgtatctttatgaaaatcagttttctggggagatacctatggagattggtaattgttcagaattgcaaatggttgatttctttggtaaccattttggtgg |
220 |
Q |
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| T |
14882989 |
tgtatctttatgaaaatcagttttctggggagatacctatggagattggtaattgttcagaattgcaaatggttgatttctttggtaaccattttggtgg |
14882890 |
T |
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| Q |
221 |
aagaattccaatcactattggaaggttaagggaattgagttttcttcatcttaggcaaaatgatcttgttggtgagattccagctacacttgggaattgt |
320 |
Q |
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| T |
14882889 |
aagaattccaatcactattggaaggttaaggtaattgagttttcttcatcttaggtaaaatgatcttgttggtgagattccagctacacttgggaattgt |
14882790 |
T |
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| Q |
321 |
cataaactaagtgtgttggatttggctgataataacctctctg |
363 |
Q |
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| T |
14882789 |
cataaactaagtgtgttggatttggctgataataacctctctg |
14882747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 54 - 363
Target Start/End: Original strand, 39004741 - 39005050
Alignment:
| Q |
54 |
ttgtatcataacaagttgcacggtgctttgcctaaagagattggaaggcttggaaagttggaaattttgtatctttatgaaaatcagttttctggggaga |
153 |
Q |
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| T |
39004741 |
ttgtatcacaacaaattgcagggtgatcttccaagagagattggaatgcttgaaaagttggaaattttgtatctttatgataatcaattatctggggata |
39004840 |
T |
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| Q |
154 |
tacctatggagattggtaattgttcagaattgcaaatggttgatttctttggtaaccattttggtggaagaattccaatcactattggaaggttaaggga |
253 |
Q |
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||||||||||||||||||| |||||| ||||||||| ||||||||||||| ||| ||| || |||||| ||||||||||||||| ||| || |
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| T |
39004841 |
tacctatggagattggtaactgttcaagcttgcaaatgattgatttctttggaaacagtttcaagggggaaattcccatcactattggaaggctaaaaga |
39004940 |
T |
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| Q |
254 |
attgagttttcttcatcttaggcaaaatgatcttgttggtgagattccagctacacttgggaattgtcataaactaagtgtgttggatttggctgataat |
353 |
Q |
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| T |
39004941 |
gttgaatttccttcacctcaggcagaatgagcttgtgggtgagattcctgcaaccttggggaactgtcataaactgaatatcttggatttggctgataat |
39005040 |
T |
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| Q |
354 |
aacctctctg |
363 |
Q |
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| T |
39005041 |
cagctctctg |
39005050 |
T |
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