View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9884_low_18 (Length: 358)
Name: NF9884_low_18
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 24409398 - 24409719
Alignment:
| Q |
1 |
aaggctgtattgcacagaacaactgtaaacaaagatgagacaagaatgtcgtggccagtgttcatagaacccaagccagaaaacgaagttggtcctcacc |
100 |
Q |
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| T |
24409398 |
aaggctgtattgcacagaacaactgtaaacaaagatgagacaagaatgtcgtggccagtgttcatagaacccaagccagaaaacgaagttggtcctcacc |
24409497 |
T |
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| Q |
101 |
caaagtttgttaaccaagagaatcctccaaagtacaaaaccaagaaatataaggattatgcttactgtaagcttaataagatccctcaataaaggaagaa |
200 |
Q |
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| T |
24409498 |
caaagtttgttaaccaagagaatcctccaaagtacaaaaccaagaaatataaggattatgcttactgtaagcttaataagatccctcaataaaggaagaa |
24409597 |
T |
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| Q |
201 |
gctctacaatgaaataatttagtgaacttttcatgtcacactatgaatacattgtttcttgtgttggttaatttccacaaatgatcatgttggtatgtat |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||| |||||| |
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| T |
24409598 |
gctctacaatgaaataatttagtgaacatttcatgtcacactatgaatacattgtttcttgtgttggttaatttccac-aatgattatg-tggcatgtat |
24409695 |
T |
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| Q |
301 |
gaatggaataaaatacgtagctaa |
324 |
Q |
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||| | |||| |||| |||||||| |
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| T |
24409696 |
gaacgaaatacaatatgtagctaa |
24409719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 24401191 - 24401390
Alignment:
| Q |
1 |
aaggctgtattgcacagaacaactgtaaacaaagatgagacaagaatgtcgtggccagtgttcatagaacccaagccagaaaacgaagttggtcctcacc |
100 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||||||||| | ||| |||||||||| | |
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| T |
24401191 |
aaggctgtattgcacagaacaacagtgaacaaagatgagacaagaatgtcgtggccagtgttcatagagccaaagccagaacatgaaattggtcctcatc |
24401290 |
T |
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| Q |
101 |
caaagtttgttaaccaagagaatcctccaaagtacaaaaccaagaaatataaggattatgcttactgtaagcttaataagatccctcaataaaggaagaa |
200 |
Q |
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| T |
24401291 |
caaagttggttaaccaagagaatccaccaaagtataagaccaagaaatttgaggattatctttattgtaagcttaataagatccctcagtaaaggaagaa |
24401390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 32772165 - 32772352
Alignment:
| Q |
1 |
aaggctgtattgcacagaacaactgtaaacaaagatgagacaagaatgtcgtggccagtgttcatagaacccaagccagaaaacgaagttggtcctcacc |
100 |
Q |
| |
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|||||| |||| ||||||||||| || | |||||||| |||||||| || |||||||||||||||||||| | ||||| | |||||||| ||||||| |
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| T |
32772165 |
aaggctatattacacagaacaacagtgagcaaagatgcaacaagaatttcttggccagtgttcatagaaccgcaaccagagcaagaagttgggcctcacc |
32772264 |
T |
|
| Q |
101 |
caaagtttgttaaccaagagaatcctccaaagtacaaaaccaagaaatataaggattatgcttactgtaagcttaataagatccctca |
188 |
Q |
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|||| | ||||||||||| || || ||||| | ||| ||||||||||| || |||||||| ||||||||||| |||||||||||||| |
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| T |
32772265 |
caaaactggttaaccaagacaacccaccaaaattcaagaccaagaaatacaaagattatgcatactgtaagctcaataagatccctca |
32772352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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