View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9884_low_19 (Length: 358)
Name: NF9884_low_19
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_low_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 351
Target Start/End: Complemental strand, 185458 - 185124
Alignment:
| Q |
17 |
agtttagatgctgttgctgctcaatctttaaattatgattactctcaacctcctcgtctggtccatagactagacagagactgttctggaattcttgtca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
185458 |
agtttagatgctgttgctgctcaatctttaaattatgattactctcaacctcctcgtttggtccatagactagacagagactgttctggaattcttgtca |
185359 |
T |
|
| Q |
117 |
tgggaagaacaaagacaactaccgtacttctgcattccatcttccgtgaaaaaacttcaagggcttcaaatgaggagaatgaccctgaaaagagaatcct |
216 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
185358 |
tgggaagaacaaagacatctaccgcacttctgcattccatcttccgtgaaaaaacttcaagggcttcaaatgaggagaatgacactgaaaagataatcct |
185259 |
T |
|
| Q |
217 |
acaaagaaggtattgggcattggttcttggatgtcctagacgttcaggcggggttgttaatgctccactctgtaaggtttgtatccatattctgaactta |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
185258 |
acaaagaaggtattgggcattggttcttggatgtcctagacgttcaggcggggttgttaatgctccactcggtaaggtttgtatccatattctgaactta |
185159 |
T |
|
| Q |
317 |
cctatgtcacaatgttcttggatgtcctcatattg |
351 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||| |
|
|
| T |
185158 |
cttatgtcacaatgttgttggatgtcctcatattg |
185124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University