View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9884_low_20 (Length: 357)

Name: NF9884_low_20
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9884_low_20
NF9884_low_20
[»] chr5 (25 HSPs)
chr5 (129-341)||(37638301-37638512)
chr5 (129-341)||(37822459-37822670)
chr5 (129-341)||(37710062-37710273)
chr5 (129-341)||(37394280-37394491)
chr5 (129-341)||(37531655-37531866)
chr5 (129-341)||(37592759-37592970)
chr5 (129-341)||(37695150-37695361)
chr5 (173-341)||(37402392-37402560)
chr5 (14-129)||(7121315-7121433)
chr5 (254-341)||(37434389-37434476)
chr5 (14-120)||(40721676-40721783)
chr5 (14-125)||(42537011-42537124)
chr5 (14-61)||(21789615-21789662)
chr5 (76-126)||(7006356-7006406)
chr5 (14-60)||(21715700-21715746)
chr5 (15-61)||(25641884-25641930)
chr5 (14-127)||(3371272-3371387)
chr5 (77-128)||(30668923-30668974)
chr5 (80-125)||(7122518-7122565)
chr5 (80-124)||(3370128-3370174)
chr5 (76-124)||(3859759-3859809)
chr5 (80-126)||(21789547-21789594)
chr5 (80-124)||(40728285-40728331)
chr5 (79-121)||(25642738-25642782)
chr5 (213-341)||(37439710-37439836)
[»] chr4 (43 HSPs)
chr4 (169-341)||(16844390-16844563)
chr4 (22-133)||(10670320-10670430)
chr4 (22-133)||(10883959-10884069)
chr4 (14-61)||(21021171-21021218)
chr4 (14-61)||(25437997-25438044)
chr4 (14-61)||(30606092-30606139)
chr4 (14-61)||(34422119-34422166)
chr4 (16-61)||(23020095-23020140)
chr4 (221-330)||(24219133-24219242)
chr4 (14-126)||(46079139-46079253)
chr4 (80-128)||(48183196-48183245)
chr4 (77-121)||(2569123-2569167)
chr4 (131-187)||(16844574-16844628)
chr4 (80-135)||(40314205-40314261)
chr4 (80-135)||(40324281-40324337)
chr4 (80-135)||(30607204-30607261)
chr4 (14-60)||(40315326-40315372)
chr4 (14-60)||(40325401-40325447)
chr4 (80-126)||(4493689-4493737)
chr4 (80-126)||(25439136-25439184)
chr4 (80-126)||(48181822-48181870)
chr4 (76-124)||(53552301-53552352)
chr4 (80-125)||(34423231-34423278)
chr4 (14-61)||(2713254-2713301)
chr4 (80-124)||(4499799-4499845)
chr4 (78-126)||(21077134-21077184)
chr4 (14-61)||(33269459-33269506)
chr4 (19-61)||(2568218-2568260)
chr4 (79-129)||(2711970-2712020)
chr4 (76-123)||(21021235-21021284)
chr4 (76-125)||(33269522-33269572)
chr4 (80-127)||(34422049-34422098)
chr4 (76-120)||(23020158-23020203)
chr4 (14-124)||(42250138-42250248)
chr4 (80-116)||(10671513-10671549)
chr4 (80-116)||(10885153-10885189)
chr4 (17-61)||(21462993-21463037)
chr4 (75-126)||(21464111-21464163)
chr4 (80-125)||(25437929-25437976)
chr4 (80-125)||(30606024-30606071)
chr4 (80-125)||(40315393-40315440)
chr4 (80-125)||(40325468-40325515)
chr4 (76-125)||(48508288-48508339)
[»] chr3 (16 HSPs)
chr3 (14-126)||(28039925-28040038)
chr3 (14-61)||(24170665-24170712)
chr3 (80-128)||(28038782-28038830)
chr3 (81-124)||(7104546-7104589)
chr3 (14-61)||(18320896-18320943)
chr3 (76-126)||(49116842-49116893)
chr3 (76-125)||(39274617-39274667)
chr3 (78-125)||(5117788-5117836)
chr3 (77-124)||(23494350-23494398)
chr3 (76-125)||(5117363-5117413)
chr3 (79-126)||(18320963-18321012)
chr3 (77-126)||(26165875-26165925)
chr3 (76-125)||(26167231-26167281)
chr3 (76-125)||(38602600-38602648)
chr3 (79-124)||(39747182-39747227)
chr3 (81-125)||(50563944-50563989)
[»] chr1 (37 HSPs)
chr1 (14-127)||(20159219-20159334)
chr1 (14-139)||(49762569-49762698)
chr1 (14-61)||(16829921-16829968)
chr1 (14-126)||(22059736-22059849)
chr1 (14-61)||(46625735-46625782)
chr1 (80-139)||(49763713-49763774)
chr1 (78-127)||(36632268-36632316)
chr1 (76-129)||(6668314-6668369)
chr1 (76-127)||(10374131-10374183)
chr1 (76-127)||(22058694-22058746)
chr1 (14-61)||(27903020-27903067)
chr1 (79-125)||(38132676-38132723)
chr1 (76-123)||(45459719-45459766)
chr1 (14-61)||(48642125-48642172)
chr1 (14-61)||(50962619-50962666)
chr1 (76-127)||(17865684-17865737)
chr1 (76-125)||(38174064-38174114)
chr1 (76-126)||(21796113-21796165)
chr1 (17-61)||(7378386-7378430)
chr1 (80-129)||(16829849-16829900)
chr1 (80-125)||(16831065-16831112)
chr1 (76-125)||(17864836-17864887)
chr1 (80-125)||(20160431-20160478)
chr1 (76-125)||(27902952-27903003)
chr1 (79-122)||(9775863-9775906)
chr1 (80-124)||(21813848-21813894)
chr1 (80-124)||(27362161-27362207)
chr1 (76-123)||(48642062-48642109)
chr1 (76-126)||(48643347-48643398)
chr1 (78-124)||(39910648-39910694)
chr1 (16-61)||(32975649-32975694)
chr1 (78-126)||(45459210-45459259)
chr1 (80-126)||(46625803-46625851)
chr1 (33-61)||(27362112-27362140)
chr1 (87-127)||(39896298-39896338)
chr1 (87-127)||(39911558-39911598)
chr1 (80-125)||(46624603-46624650)
[»] chr7 (33 HSPs)
chr7 (14-126)||(28240665-28240780)
chr7 (14-61)||(27250035-27250082)
chr7 (14-61)||(29674580-29674627)
chr7 (14-61)||(39050006-39050053)
chr7 (75-125)||(11845717-11845767)
chr7 (76-129)||(15992324-15992379)
chr7 (14-61)||(7468130-7468177)
chr7 (14-128)||(39174260-39174375)
chr7 (76-124)||(11651340-11651389)
chr7 (80-130)||(39050652-39050704)
chr7 (76-125)||(44377461-44377512)
chr7 (76-125)||(44386328-44386379)
chr7 (80-124)||(7468064-7468109)
chr7 (80-134)||(27249958-27250014)
chr7 (80-126)||(34461153-34461201)
chr7 (16-61)||(44377529-44377574)
chr7 (16-61)||(44386396-44386441)
chr7 (76-128)||(48989275-48989328)
chr7 (77-121)||(11652487-11652531)
chr7 (76-127)||(15993778-15993830)
chr7 (14-126)||(32042914-32043027)
chr7 (78-124)||(8490852-8490899)
chr7 (14-61)||(11651405-11651452)
chr7 (14-61)||(35357518-35357565)
chr7 (14-61)||(37746123-37746170)
chr7 (80-125)||(44523536-44523582)
chr7 (75-125)||(26906485-26906537)
chr7 (76-124)||(28395008-28395057)
chr7 (76-124)||(32040953-32041002)
chr7 (77-125)||(37747432-37747481)
chr7 (17-61)||(15992395-15992439)
chr7 (21-61)||(21520508-21520548)
chr7 (80-125)||(27251131-27251178)
[»] chr8 (32 HSPs)
chr8 (14-61)||(38982177-38982224)
chr8 (14-61)||(39013274-39013321)
chr8 (14-60)||(9556946-9556992)
chr8 (16-61)||(4081816-4081861)
chr8 (16-61)||(4085965-4086010)
chr8 (75-123)||(33284378-33284426)
chr8 (14-61)||(26169265-26169312)
chr8 (21-135)||(44058197-44058314)
chr8 (75-123)||(14529631-14529680)
chr8 (76-125)||(20164623-20164674)
chr8 (80-126)||(9555842-9555889)
chr8 (14-61)||(43324999-43325046)
chr8 (80-127)||(26169195-26169244)
chr8 (76-125)||(3777125-3777174)
chr8 (16-61)||(20164690-20164735)
chr8 (79-124)||(37124199-37124244)
chr8 (17-61)||(37482333-37482377)
chr8 (80-125)||(38983292-38983339)
chr8 (80-125)||(39014389-39014436)
chr8 (76-127)||(43325063-43325115)
chr8 (76-130)||(37483394-37483449)
chr8 (79-126)||(37871892-37871939)
chr8 (79-125)||(13163240-13163286)
chr8 (80-125)||(26170407-26170453)
chr8 (80-124)||(4081882-4081929)
chr8 (80-124)||(4086031-4086078)
chr8 (76-124)||(30680239-30680288)
chr8 (76-124)||(43323790-43323839)
chr8 (80-124)||(9557015-9557059)
chr8 (80-125)||(38982109-38982156)
chr8 (80-125)||(39013206-39013253)
chr8 (80-125)||(44057140-44057187)
[»] chr6 (22 HSPs)
chr6 (14-61)||(28189194-28189241)
chr6 (76-125)||(17139766-17139815)
chr6 (14-125)||(34492360-34492474)
chr6 (16-61)||(28564241-28564286)
chr6 (76-126)||(18325539-18325590)
chr6 (76-136)||(20400129-20400191)
chr6 (77-131)||(5756406-5756460)
chr6 (14-60)||(29057404-29057450)
chr6 (77-123)||(29057497-29057543)
chr6 (76-124)||(2405055-2405104)
chr6 (14-61)||(17184508-17184555)
chr6 (79-136)||(17141210-17141268)
chr6 (19-61)||(18325606-18325648)
chr6 (76-126)||(2403672-2403724)
chr6 (79-139)||(3587707-3587767)
chr6 (16-61)||(17139831-17139875)
chr6 (76-126)||(28189258-28189310)
chr6 (79-139)||(28743623-28743684)
chr6 (17-61)||(2404994-2405038)
chr6 (14-50)||(16841021-16841057)
chr6 (76-125)||(17184570-17184621)
chr6 (98-134)||(17441392-17441428)
[»] chr2 (14 HSPs)
chr2 (14-61)||(15248456-15248503)
chr2 (76-139)||(42744116-42744180)
chr2 (14-59)||(9894488-9894533)
chr2 (17-61)||(22286065-22286109)
chr2 (14-61)||(5202795-5202842)
chr2 (80-139)||(15249552-15249612)
chr2 (76-139)||(25979572-25979635)
chr2 (76-126)||(18695344-18695397)
chr2 (14-61)||(18748047-18748094)
chr2 (17-60)||(18859139-18859182)
chr2 (14-61)||(25979651-25979698)
chr2 (76-121)||(43235894-43235939)
chr2 (80-125)||(15248388-15248435)
chr2 (14-58)||(18695417-18695461)
[»] scaffold0012 (3 HSPs)
scaffold0012 (14-61)||(53438-53485)
scaffold0012 (80-124)||(53372-53417)
scaffold0012 (80-122)||(54518-54562)
[»] scaffold0230 (2 HSPs)
scaffold0230 (76-126)||(18765-18816)
scaffold0230 (19-61)||(18707-18749)
[»] scaffold0013 (1 HSPs)
scaffold0013 (76-130)||(100916-100972)
[»] scaffold0862 (2 HSPs)
scaffold0862 (76-126)||(682-733)
scaffold0862 (17-61)||(750-794)
[»] scaffold0265 (1 HSPs)
scaffold0265 (80-124)||(18915-18961)
[»] scaffold0087 (1 HSPs)
scaffold0087 (76-123)||(42090-42138)


Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 129 - 341
Target Start/End: Original strand, 37638301 - 37638512
Alignment:
Q  129 atatatatataatactacatcccttaaactgggaaatttcagattaattacaaacagttgtatctacatatttgaaaagaccatcatccaattaattcat 228  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  37638301 atatatatataatactacatcccttaaactgggaaatt-cagattaattacaaacagttgtaactacatatttgaaaagaccctcatccaattaattcat 37638399  T
Q  229 tcttctgcgatttgcgatggctctgttgtttgttcttttcaatcttatgtcaaacatatgttcaacatgtcttgcaagccattcgggtttaccagtgaag 328  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37638400 tcttctgcgatttgcgatggctctgttgttcgttcttttcaatcttatgtcaaacatatgttcaacatgtcttgcaagccattcgggtttaccagtgaag 37638499  T
Q  329 aagaatacattat 341  Q
    |||||||||||||    
T  37638500 aagaatacattat 37638512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 129 - 341
Target Start/End: Original strand, 37822459 - 37822670
Alignment:
Q  129 atatatatataatactacatcccttaaactgggaaatttcagattaattacaaacagttgtatctacatatttgaaaagaccatcatccaattaattcat 228  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  37822459 atatatatataatactacatcccttaaactgggaaatt-cagattaattacaaacagttgtaactacatatttgaaaagaccctcatccaattaattcat 37822557  T
Q  229 tcttctgcgatttgcgatggctctgttgtttgttcttttcaatcttatgtcaaacatatgttcaacatgtcttgcaagccattcgggtttaccagtgaag 328  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37822558 tcttatgcgatttgcgatggctctgttgttcgttcttttcaatcttatgtcaaacatatgttcaacatgtcttgcaagccattcgggtttaccagtgaag 37822657  T
Q  329 aagaatacattat 341  Q
    |||||||||||||    
T  37822658 aagaatacattat 37822670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 129 - 341
Target Start/End: Original strand, 37710062 - 37710273
Alignment:
Q  129 atatatatataatactacatcccttaaactgggaaatttcagattaattacaaacagttgtatctacatatttgaaaagaccatcatccaattaattcat 228  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  37710062 atatatatatgatactacatcccttaaactgggaaatt-cagattaattacaaacagttatatctacatatttgaaaacaccatcatccaattaattcat 37710160  T
Q  229 tcttctgcgatttgcgatggctctgttgtttgttcttttcaatcttatgtcaaacatatgttcaacatgtcttgcaagccattcgggtttaccagtgaag 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  37710161 tcttctgcgatttgcgatggctctgttgtttgttcttttcaatcttatgtcaaacatatgttcaacatgtcttacaagccattcgggtttaccggtgaag 37710260  T
Q  329 aagaatacattat 341  Q
    |||||||||||||    
T  37710261 aagaatacattat 37710273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 129 - 341
Target Start/End: Complemental strand, 37394491 - 37394280
Alignment:
Q  129 atatatatataatactacatcccttaaactgggaaatttcagattaattacaaacagttgtatctacatatttgaaaagaccatcatccaattaattcat 228  Q
    ||||||||||||| ||||||||||||||||||||  ||| ||||||  ||||||||||||||| || ||||||||||| ||| ||||| |||||||||||    
T  37394491 atatatatataatgctacatcccttaaactgggatgttt-agattacatacaaacagttgtatttatatatttgaaaacaccctcatcaaattaattcat 37394393  T
Q  229 tcttctgcgatttgcgatggctctgttgtttgttcttttcaatcttatgtcaaacatatgttcaacatgtcttgcaagccattcgggtttaccagtgaag 328  Q
     ||||| ||||||  | ||||||| ||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| |||||||||    
T  37394392 ccttctacgatttaagttggctctattgtttgatcttttcaatcttatgttaaacatattttcaacatgtcttgcaagccattggggttttccagtgaag 37394293  T
Q  329 aagaatacattat 341  Q
    |||||||||||||    
T  37394292 aagaatacattat 37394280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 129 - 341
Target Start/End: Original strand, 37531655 - 37531866
Alignment:
Q  129 atatatatataatactacatcccttaaactgggaaatttcagattaattacaaacagttgtatctacatatttgaaaagaccatcatccaattaattcat 228  Q
    ||||||||||||||| ||||||||||||||||||| || | |||||||||||||||| |||| ||||||||||||||| || | |||| |||||||||||    
T  37531655 atatatatataatacaacatcccttaaactgggaagtt-ctgattaattacaaacagctgtaactacatatttgaaaatacaaacatcaaattaattcat 37531753  T
Q  229 tcttctgcgatttgcgatggctctgttgtttgttcttttcaatcttatgtcaaacatatgttcaacatgtcttgcaagccattcgggtttaccagtgaag 328  Q
    |||||||||||||||   |  |||||||||||||||||||| |||||||| |||||| | |||||||  |||  |||||||||  |||||||||||||||    
T  37531754 tcttctgcgatttgcacagtatctgttgtttgttcttttcagtcttatgttaaacatgttttcaacaattctaacaagccattgaggtttaccagtgaag 37531853  T
Q  329 aagaatacattat 341  Q
    |||||||||||||    
T  37531854 aagaatacattat 37531866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 129 - 341
Target Start/End: Original strand, 37592759 - 37592970
Alignment:
Q  129 atatatatataatactacatcccttaaactgggaaatttcagattaattacaaacagttgtatctacatatttgaaaagaccatcatccaattaattcat 228  Q
    ||||||||||||||| ||||||||||||||||||| || | |||||||||||||||| |||| ||||||||||||||| || | |||| |||||||||||    
T  37592759 atatatatataatacaacatcccttaaactgggaagtt-ctgattaattacaaacagctgtaactacatatttgaaaatacaaacatcaaattaattcat 37592857  T
Q  229 tcttctgcgatttgcgatggctctgttgtttgttcttttcaatcttatgtcaaacatatgttcaacatgtcttgcaagccattcgggtttaccagtgaag 328  Q
    |||||||||||||||   |  |||||||||||||||||||| |||||||| |||||| | |||||||  |||  |||||||||  |||||||||||||||    
T  37592858 tcttctgcgatttgcacagtatctgttgtttgttcttttcagtcttatgttaaacatgttttcaacaattctaacaagccattgaggtttaccagtgaag 37592957  T
Q  329 aagaatacattat 341  Q
    |||||||||||||    
T  37592958 aagaatacattat 37592970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 129 - 341
Target Start/End: Original strand, 37695150 - 37695361
Alignment:
Q  129 atatatatataatactacatcccttaaactgggaaatttcagattaattacaaacagttgtatctacatatttgaaaagaccatcatccaattaattcat 228  Q
    ||||||||||||||| ||||||||||||||||||| || | |||||||||  ||||| |||| ||||||||||||||| || | |||| |||||||||||    
T  37695150 atatatatataatacaacatcccttaaactgggaagtt-ctgattaattaataacagctgtaactacatatttgaaaatacaaacatcaaattaattcat 37695248  T
Q  229 tcttctgcgatttgcgatggctctgttgtttgttcttttcaatcttatgtcaaacatatgttcaacatgtcttgcaagccattcgggtttaccagtgaag 328  Q
    |||||||||||||||   |  |||||||||||||||||||| |||||||| |||||| | |||||||  |||  |||||||||  |||||||||||||||    
T  37695249 tcttctgcgatttgcacagtatctgttgtttgttcttttcagtcttatgttaaacatgttttcaacaattctaacaagccattgaggtttaccagtgaag 37695348  T
Q  329 aagaatacattat 341  Q
    |||||||||||||    
T  37695349 aagaatacattat 37695361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 173 - 341
Target Start/End: Complemental strand, 37402560 - 37402392
Alignment:
Q  173 taattacaaacagttgtatctacatatttgaaaagaccatcatccaattaattcattcttctgcgatttgcgatggctctgttgtttgttcttttcaatc 272  Q
    ||||||||||||| |||| ||||||||||||||| || | |||| ||||||||||||||||||||||||||   |  |||||||||||||||||||| ||    
T  37402560 taattacaaacagctgtaactacatatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtc 37402461  T
Q  273 ttatgtcaaacatatgttcaacatgtcttgcaagccattcgggtttaccagtgaagaagaatacattat 341  Q
    |||||| |||||| | |||||||  |||  |||||||||  ||||||||||||||||||||||||||||    
T  37402460 ttatgttaaacatgttttcaacaattctaacaagccattgaggtttaccagtgaagaagaatacattat 37402392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 7121433 - 7121315
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaaccnnnnnnnnnnaca---gggtaaaccggaactcgcccaaattac-tggggta 109  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |          |||   ||| |||||||||||||||||||||||  ||||||    
T  7121433 aggggtgttttgtggagaatctttatattatagggttggaatctaaa-cttttttttttacaggggggaaaaccggaactcgcccaaattacagggggta 7121335  T
Q  110 aagacatattaacccttaaa 129  Q
    ||||||||||||||||||||    
T  7121334 aagacatattaacccttaaa 7121315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 341
Target Start/End: Original strand, 37434389 - 37434476
Alignment:
Q  254 ttgtttgttcttttcaatcttatgtcaaacatatgttcaacatgtcttgcaagccattcgggtttaccagtgaagaagaatacattat 341  Q
    |||||||||||||||| |||||||| |||| |||| |||||| ||||   |||||||| |||||| ||||||||||||||||||||||    
T  37434389 ttgtttgttcttttcattcttatgttaaacgtatgctcaacaagtctaagaagccattggggttttccagtgaagaagaatacattat 37434476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 40721783 - 40721676
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaaccnnnnnnnnnnaca--gggtaaaccggaactcgcccaaattactggggtaaa 111  Q
    |||||||||||||| | |||||||||||||||||||||||||||||| |          |||  ||| ||||||||||||||||||||||| ||||||||    
T  40721783 aggggtgttttgtgaagaatctttatattatagggttggaatctaaa-cttttttttttacagggggaaaaccggaactcgcccaaattacaggggtaaa 40721685  T
Q  112 gacatatta 120  Q
    |||||||||    
T  40721684 gacatatta 40721676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 42537011 - 42537124
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaaccnnnnnnnnnnacagg-gtaaaccggaactcgcccaaattac-tggggtaaa 111  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||           ||||| | |||||||||||||||||||||||   |||||||    
T  42537011 aggggtgttttgtggagaatcttcatattatagggttggaatctaaactttttttttttacaggagaaaaccggaactcgcccaaattacaatgggtaaa 42537110  T
Q  112 gacatattaaccct 125  Q
    ||||||||||||||    
T  42537111 gacatattaaccct 42537124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 21789662 - 21789615
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||    
T  21789662 aggggtgttttgtggagaatctttatattacagggttggaatctaaac 21789615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 7006356 - 7006406
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactggggtaaagacatattaaccctt 126  Q
    ||||||| | ||||||||||||||||| |||||||||||||||||||||||    
T  7006356 gggtaaatcagaactcgcccaaattacaggggtaaagacatattaaccctt 7006406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 21715746 - 21715700
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaa 60  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||    
T  21715746 aggggtgttttgtggagaatctttatattacagggttggaatctaaa 21715700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 25641930 - 25641884
Alignment:
Q  15 ggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||    
T  25641930 ggggtgttttgtggagaatcttcatattatagggttggaatctaaac 25641884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 3371272 - 3371387
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaaccnnnnnnnnnnacagggt---aaaccggaactcgcccaaattac-tggggta 109  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||           ||||||    |||||||||||||||||||||||  ||||||    
T  3371272 aggggtgttttgtg-agaatctttatattatagggttggaatctaaac-ttttttttttacaggggggaaaaccggaactcgcccaaattacagggggta 3371369  T
Q  110 aagacatattaaccctta 127  Q
    ||||||||||||||||||    
T  3371370 aagacatattaaccctta 3371387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 30668923 - 30668974
Alignment:
Q  77 ggtaaaccggaactcgcccaaattactggggtaaagacatattaacccttaa 128  Q
    |||||||||||||||||| ||||||| ||| |||| ||||||||||||||||    
T  30668923 ggtaaaccggaactcgcctaaattacagggataaatacatattaacccttaa 30668974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 7122518 - 7122565
Alignment:
Q  80 aaaccggaactcgcccaaattactgg--ggtaaagacatattaaccct 125  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  7122518 aaaccggaactcgcccaaattacagggaggtaaagacatattaaccct 7122565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 3370174 - 3370128
Alignment:
Q  80 aaaccggaactcgcccaaattac--tggggtaaagacatattaaccc 124  Q
    |||||||||||||||||||||||   |||||||||||||||||||||    
T  3370174 aaaccggaactcgcccaaattacaggggggtaaagacatattaaccc 3370128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 3859809 - 3859759
Alignment:
Q  76 gggtaaaccggaactcgcccaaattac--tggggtaaagacatattaaccc 124  Q
    |||||||||||||||||||||||||||   |||||||| ||||||||||||    
T  3859809 gggtaaaccggaactcgcccaaattacaggggggtaaacacatattaaccc 3859759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 21789594 - 21789547
Alignment:
Q  80 aaaccggaactcgcccaaattactgggg-taaagacatattaaccctt 126  Q
    ||||||||||||||| ||||||| |||| |||||||||||||||||||    
T  21789594 aaaccggaactcgcctaaattacagggggtaaagacatattaaccctt 21789547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 40728285 - 40728331
Alignment:
Q  80 aaaccggaactcgcccaaattac--tggggtaaagacatattaaccc 124  Q
    |||||||||||||||||||||||   |||||||||||||||||||||    
T  40728285 aaaccggaactcgcccaaattacaggggggtaaagacatattaaccc 40728331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 25642738 - 25642782
Alignment:
Q  79 taaaccggaactcgcccaaattac--tggggtaaagacatattaa 121  Q
    ||||||||||||||||||||||||   ||||||||||||||||||    
T  25642738 taaaccggaactcgcccaaattacaggggggtaaagacatattaa 25642782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 341
Target Start/End: Original strand, 37439710 - 37439836
Alignment:
Q  213 catccaattaattcattcttctgcgatttgcgatggctctgttgtttgttcttttcaatcttatgtcaaacatatgttcaacatgtcttgcaagccattc 312  Q
    |||| ||||||||||||||  || ||||||| | || ||  |||||||||||||||| |||||||| |||  ||||  ||||| ||||   ||| |||||    
T  37439710 catcaaattaattcattcta-tgtgatttgcaagggatcaattgtttgttcttttcagtcttatgttaaatgtatgc-caacaagtctaagaagtcattc 37439807  T
Q  313 gggtttaccagtgaagaagaatacattat 341  Q
     ||||| |||||||||||||||| |||||    
T  37439808 aggttttccagtgaagaagaatagattat 37439836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 169 - 341
Target Start/End: Complemental strand, 16844563 - 16844390
Alignment:
Q  169 agattaattacaaacagttgtatctacatatttgaaaaga-ccatcatccaattaattcattcttctgcgatttgcgatggctctgttgtttgttctttt 267  Q
    |||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||| |||||||||| | ||||||||| ||||||||||    
T  16844563 agattaattacaaacagttgtatctacatatttgaaaaaaaccctcatccaattaattcattcttcggcgatttgcggttgctctgttgattgttctttt 16844464  T
Q  268 caatcttatgtcaaacatatgttcaacatgtcttgcaagccattcgggtttaccagtgaagaagaatacattat 341  Q
    ||||||||||| ||||||| ||||||||||||||||||| |||| |||||| ||||||||||||||||||||||    
T  16844463 caatcttatgttaaacatacgttcaacatgtcttgcaaggcattggggttttccagtgaagaagaatacattat 16844390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 10670430 - 10670320
Alignment:
Q  22 tttgtggataatctttatattatagggttggaatctaaaccnnnnnnnnnnacagggtaaaccggaactcgcccaaattactgg-ggtaaagacatatta 120  Q
    |||||||| |||||||||||||||||||||||||||||||           |  ||||||||||||||||||||||||||| || |||||||||||||||    
T  10670430 tttgtggagaatctttatattatagggttggaatctaaac--ttttttttcagggggtaaaccggaactcgcccaaattacaggaggtaaagacatatta 10670333  T
Q  121 acccttaaatata 133  Q
    ||||| |||||||    
T  10670332 accctaaaatata 10670320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 10884069 - 10883959
Alignment:
Q  22 tttgtggataatctttatattatagggttggaatctaaaccnnnnnnnnnnacagggtaaaccggaactcgcccaaattactgg-ggtaaagacatatta 120  Q
    |||||||| |||||||||||||||||||||||||||||||           |  ||||||||||||||||||||||||||| || |||||||||||||||    
T  10884069 tttgtggagaatctttatattatagggttggaatctaaac--ttttttttcagggggtaaaccggaactcgcccaaattacaggaggtaaagacatatta 10883972  T
Q  121 acccttaaatata 133  Q
    ||||| |||||||    
T  10883971 accctaaaatata 10883959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 21021171 - 21021218
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  21021171 aggggtgttttgtggagaatctttatattatagggttggaatctaaac 21021218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 25438044 - 25437997
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  25438044 aggggtgttttgtggagaatctttatattatagggttggaatctaaac 25437997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 30606139 - 30606092
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  30606139 aggggtgttttgtggagaatctttatattatagggttggaatctaaac 30606092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 34422166 - 34422119
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  34422166 aggggtgttttgtggagaatctttatattatagggttggaatctaaac 34422119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 23020095 - 23020140
Alignment:
Q  16 gggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  23020095 gggtgttttgtggagaatctttatattatagggttggaatctaaac 23020140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 221 - 330
Target Start/End: Complemental strand, 24219242 - 24219133
Alignment:
Q  221 taattcattcttctgcgatttgcgatggctctgttgtttgttcttttcaatcttatgtcaaacatatgttcaacatgtcttgcaagccattcgggtttac 320  Q
    |||||||||||||||||||||||     || | |||||||| |||||||||||||||  ||| ||   |||||||||||||||||||||||  ||||| |    
T  24219242 taattcattcttctgcgatttgcaccaactttcttgtttgtccttttcaatcttatgctaaatatgctttcaacatgtcttgcaagccattgaggtttcc 24219143  T
Q  321 cagtgaagaa 330  Q
    ||||||||||    
T  24219142 cagtgaagaa 24219133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 46079253 - 46079139
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaaccnnnnnnnnnnacaggg--taaaccggaactcgcccaaattac-tggggtaa 110  Q
    |||||||||||||| | |||||| ||||||||||||||||||||||||           ||||||  ||||||||||||||||||||||||  |||||||    
T  46079253 aggggtgttttgtgaagaatcttcatattatagggttggaatctaaac-ttttatttttacagggggtaaaccggaactcgcccaaattacagggggtaa 46079155  T
Q  111 agacatattaaccctt 126  Q
    | ||||||||||||||    
T  46079154 aaacatattaaccctt 46079139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 48183196 - 48183245
Alignment:
Q  80 aaaccggaactcgcccaaattactgggg-taaagacatattaacccttaa 128  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  48183196 aaaccggaactcgcccaaattacagggggtaaagacatattaacccttaa 48183245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 2569123 - 2569167
Alignment:
Q  77 ggtaaaccggaactcgcccaaattactggggtaaagacatattaa 121  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||    
T  2569123 ggtaaatcggaactcgcccaaattacaggggtaaagacatattaa 2569167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 16844628 - 16844574
Alignment:
Q  131 atatatataatactacatcccttaaactgggaaatttcagattaattacaaacagtt 187  Q
    ||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||    
T  16844628 atatatata-tactacatcccttaaactgagaaa-ttcagattaattacaaacagtt 16844574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 40314261 - 40314205
Alignment:
Q  80 aaaccggaactcgcccaaattactgg-ggtaaagacatattaacccttaaatatata 135  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||  |||||||    
T  40314261 aaaccggaactcgcccaaattacaggaggtaaagacatattaacccttgtatatata 40314205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 40324337 - 40324281
Alignment:
Q  80 aaaccggaactcgcccaaattactgg-ggtaaagacatattaacccttaaatatata 135  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||  |||||||    
T  40324337 aaaccggaactcgcccaaattacaggaggtaaagacatattaacccttgtatatata 40324281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 30607204 - 30607261
Alignment:
Q  80 aaaccggaactcgcccaaattac--tggggtaaagacatattaacccttaaatatata 135  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||| || |||||    
T  30607204 aaaccggaactcgcccaaattacaggggggtaaagacatattaacccttgaaaatata 30607261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 40315326 - 40315372
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaa 60  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||||||    
T  40315326 aggggtgttttgtggagaatatttatattataaggttggaatctaaa 40315372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 40325401 - 40325447
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaa 60  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||||||    
T  40325401 aggggtgttttgtggagaatatttatattataaggttggaatctaaa 40325447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 4493737 - 4493689
Alignment:
Q  80 aaaccggaactcgcccaaattac--tggggtaaagacatattaaccctt 126  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||    
T  4493737 aaaccggaactcgcccaaattacaggggggtaaagacatattaaccctt 4493689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 25439136 - 25439184
Alignment:
Q  80 aaaccggaactcgcccaaattac--tggggtaaagacatattaaccctt 126  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||    
T  25439136 aaaccggaactcgcccaaattacaagggggtaaagacatattaaccctt 25439184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 48181870 - 48181822
Alignment:
Q  80 aaaccggaactcgcccaaattac--tggggtaaagacatattaaccctt 126  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||    
T  48181870 aaaccggaactcgcccaaattacaggggggtaaagacatattaaccctt 48181822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 53552301 - 53552352
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactgg---ggtaaagacatattaaccc 124  Q
    ||||||||||||||||||||||||||| ||   |||||||||||||||||||    
T  53552301 gggtaaaccggaactcgcccaaattacagggaaggtaaagacatattaaccc 53552352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 34423231 - 34423278
Alignment:
Q  80 aaaccggaactcgcccaaattac--tggggtaaagacatattaaccct 125  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||    
T  34423231 aaaccggaactcgcccaaattacaggggggtaaagacatattaaccct 34423278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 2713254 - 2713301
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||| | |||||| ||||||||||||| ||||||||||    
T  2713254 aggggtgttttgtgaagaatcttcatattatagggttagaatctaaac 2713301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 4499799 - 4499845
Alignment:
Q  80 aaaccggaactcgcccaaattac--tggggtaaagacatattaaccc 124  Q
    |||||||||||||||||||||||   |||||||||||||||||||||    
T  4499799 aaaccggaactcgcccaaattacaggggggtaaagacatattaaccc 4499845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 21077134 - 21077184
Alignment:
Q  78 gtaaaccggaactcgcccaaattac--tggggtaaagacatattaaccctt 126  Q
    |||||||||||||||||||||||||   |||||||| ||||||||||||||    
T  21077134 gtaaaccggaactcgcccaaattacaggggggtaaatacatattaaccctt 21077184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 33269459 - 33269506
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||| | |||||| |||||||||||||| |||||||||    
T  33269459 aggggtgttttgtgaagaatcttcatattatagggttgaaatctaaac 33269506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 2568260 - 2568218
Alignment:
Q  19 tgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    ||||||||||| |||||| |||||||||||||| |||||||||    
T  2568260 tgttttgtggagaatcttcatattatagggttgaaatctaaac 2568218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 2712020 - 2711970
Alignment:
Q  79 taaaccggaactcgcccaaattactggggtaaagacatattaacccttaaa 129  Q
    |||||||||||||||| ||||||| ||| |||| ||||||||||| |||||    
T  2712020 taaaccggaactcgcctaaattacagggataaatacatattaacctttaaa 2711970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 21021235 - 21021284
Alignment:
Q  76 gggtaaaccggaactcgcccaaattac--tggggtaaagacatattaacc 123  Q
    |||||||||||||||||||||||||||   |||||||| |||||||||||    
T  21021235 gggtaaaccggaactcgcccaaattacaggggggtaaaaacatattaacc 21021284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 33269522 - 33269572
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactgggg-taaagacatattaaccct 125  Q
    ||||||||||||||||| ||||||||  |||| ||||||||||||||||||    
T  33269522 gggtaaaccggaactcgtccaaattataggggataaagacatattaaccct 33269572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 34422098 - 34422049
Alignment:
Q  80 aaaccggaactcgcccaaattactgggg--taaagacatattaaccctta 127  Q
    |||||| |||||||||||||||| ||||  ||||||||||||||||||||    
T  34422098 aaaccgaaactcgcccaaattacaggggggtaaagacatattaaccctta 34422049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 23020158 - 23020203
Alignment:
Q  76 gggtaaaccggaactcgcccaaattac-tggggtaaagacatatta 120  Q
    ||| |||||||||||||||||||||||  |||||||||||||||||    
T  23020158 gggaaaaccggaactcgcccaaattacagggggtaaagacatatta 23020203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 42250248 - 42250138
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaaccnnnnnnnnnnacagggtaaaccggaactcgcccaaattac-tggggtaaag 112  Q
    |||||||||||||| | |||||| |||||||||||||| ||| |||||           ||||| | ||||||||||||||||||||||  ||||||||     
T  42250248 aggggtgttttgtgaagaatcttcatattatagggttgaaatataaac-ttttatttttacaggattaaccggaactcgcccaaattacagggggtaaat 42250150  T
Q  113 acatattaaccc 124  Q
    ||||||||||||    
T  42250149 acatattaaccc 42250138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 10671513 - 10671549
Alignment:
Q  80 aaaccggaactcgcccaaattactggggtaaagacat 116  Q
    |||||| |||||||||||||||| |||||||||||||    
T  10671513 aaaccgaaactcgcccaaattacgggggtaaagacat 10671549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 10885153 - 10885189
Alignment:
Q  80 aaaccggaactcgcccaaattactggggtaaagacat 116  Q
    |||||| |||||||||||||||| |||||||||||||    
T  10885153 aaaccgaaactcgcccaaattacgggggtaaagacat 10885189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 21463037 - 21462993
Alignment:
Q  17 ggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    ||||||||||||| ||| || |||||||||||||| |||||||||    
T  21463037 ggtgttttgtggagaattttcatattatagggttgaaatctaaac 21462993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 21464111 - 21464163
Alignment:
Q  75 agggtaaaccggaactcgcccaaattactgggg-taaagacatattaaccctt 126  Q
    ||||||||| | |||||||||||||||  |||| |||||||||||||||||||    
T  21464111 agggtaaactgaaactcgcccaaattaaaggggataaagacatattaaccctt 21464163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 25437976 - 25437929
Alignment:
Q  80 aaaccggaactcgcccaaattactgggg--taaagacatattaaccct 125  Q
    ||||||||||||| ||||||||| ||||  ||||||||||||||||||    
T  25437976 aaaccggaactcgtccaaattacaggggggtaaagacatattaaccct 25437929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 30606071 - 30606024
Alignment:
Q  80 aaaccggaactcgcccaaattactgggg--taaagacatattaaccct 125  Q
    |||||| |||||||||||||||| ||||  ||||||||||||||||||    
T  30606071 aaaccgaaactcgcccaaattacaggggggtaaagacatattaaccct 30606024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 40315393 - 40315440
Alignment:
Q  80 aaaccggaactcgcccaaattac--tggggtaaagacatattaaccct 125  Q
    |||||||||||||||||||||||   ||||||||||||||||| ||||    
T  40315393 aaaccggaactcgcccaaattacaggggggtaaagacatattatccct 40315440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 40325468 - 40325515
Alignment:
Q  80 aaaccggaactcgcccaaattac--tggggtaaagacatattaaccct 125  Q
    |||||||||||||||||||||||   ||||||||||||||||| ||||    
T  40325468 aaaccggaactcgcccaaattacaggggggtaaagacatattatccct 40325515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 48508339 - 48508288
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactg--gggtaaagacatattaaccct 125  Q
    ||||||||||||||||||| ||||||  |  |||||||||||||||||||||    
T  48508339 gggtaaaccggaactcgccaaaattataggagggtaaagacatattaaccct 48508288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 28039925 - 28040038
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaaccnnnnnnnnnnacagggtaaaccggaactcgcccaaattac-tggggtaaag 112  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||           |  ||| |||||||||||||||||||||||  |||||||||    
T  28039925 aggggtgttttgtggagaatctttatattatagggttggaatctaaactttttttttacagggggaaaaccggaactcgcccaaattacagggggtaaag 28040024  T
Q  113 acatattaaccctt 126  Q
    ||||||||||||||    
T  28040025 acatattaaccctt 28040038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 24170712 - 24170665
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  24170712 aggggtgttttgtggagaatctttatattatagggttggaatctaaac 24170665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 28038830 - 28038782
Alignment:
Q  80 aaaccggaactcgcccaaattactggggtaaagacatattaacccttaa 128  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||    
T  28038830 aaaccgaaactcgcccaaattacaggggtaaagacatattaacccttaa 28038782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 7104589 - 7104546
Alignment:
Q  81 aaccggaactcgcccaaattactggggtaaagacatattaaccc 124  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  7104589 aaccggaactcgcccaaattacaggggtaaagacatattaaccc 7104546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 18320896 - 18320943
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||| | ||| |||||||||||||||||||||||||||    
T  18320896 aggggtgttttgtgaagaatttttatattatagggttggaatctaaac 18320943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 49116842 - 49116893
Alignment:
Q  76 gggtaaaccggaactcgcccaaattac-tggggtaaagacatattaaccctt 126  Q
    |||||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  49116842 gggtaaaccggaactcgctcaaattacagggggtaaagacatattaaccctt 49116893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 39274617 - 39274667
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactggg-gtaaagacatattaaccct 125  Q
    ||||||||||||||||||||||||||| |||  ||||||||||||||||||    
T  39274617 gggtaaaccggaactcgcccaaattacagggactaaagacatattaaccct 39274667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 5117836 - 5117788
Alignment:
Q  78 gtaaaccggaactcgcccaaattactgggg-taaagacatattaaccct 125  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||||||||    
T  5117836 gtaaaccggaactcgcctaaattacagggggtaaagacatattaaccct 5117788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 23494398 - 23494350
Alignment:
Q  77 ggtaaaccggaactcgcccaaattac-tggggtaaagacatattaaccc 124  Q
    ||||||||| ||||||||||||||||  |||||||||||||||||||||    
T  23494398 ggtaaaccgaaactcgcccaaattacagggggtaaagacatattaaccc 23494350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 5117413 - 5117363
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactgggg-taaagacatattaaccct 125  Q
    |||||||| ||||||| |||||||||| |||| ||||||||||||||||||    
T  5117413 gggtaaactggaactcacccaaattacagggggtaaagacatattaaccct 5117363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 18320963 - 18321012
Alignment:
Q  79 taaaccggaactcgcccaaattactggg--gtaaagacatattaaccctt 126  Q
    |||||||||||||||||||||| | |||  ||||||||||||||||||||    
T  18320963 taaaccggaactcgcccaaattgcaggggagtaaagacatattaaccctt 18321012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 26165925 - 26165875
Alignment:
Q  77 ggtaaaccggaactcgcccaaattactgggg-taaagacatattaaccctt 126  Q
    |||||| ||||||||||||||||||  |||| |||||||||||||||||||    
T  26165925 ggtaaatcggaactcgcccaaattatagggggtaaagacatattaaccctt 26165875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 26167231 - 26167281
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactgggg-taaagacatattaaccct 125  Q
    ||||||||||||| ||||| ||||||| |||| ||||||||||||||||||    
T  26167231 gggtaaaccggaattcgcctaaattacagggggtaaagacatattaaccct 26167281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 38602600 - 38602648
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactggggtaaagacatattaaccct 125  Q
    ||||||| ||||||||||| ||||||| ||||||||||| ||||||||||    
T  38602600 gggtaaatcggaactcgcctaaattacaggggtaaagac-tattaaccct 38602648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 39747182 - 39747227
Alignment:
Q  79 taaaccggaactcgcccaaattactggggtaaagacatattaaccc 124  Q
    |||||| ||||||||||||||||| |||||||| | ||||||||||    
T  39747182 taaaccagaactcgcccaaattacaggggtaaaaatatattaaccc 39747227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 50563989 - 50563944
Alignment:
Q  81 aaccggaactcgcccaaattactgg-ggtaaagacatattaaccct 125  Q
    |||||||||||||| ||||||| || ||||||||||||||||||||    
T  50563989 aaccggaactcgcctaaattacaggtggtaaagacatattaaccct 50563944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 20159334 - 20159219
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaaccnnnnnnnnnnacagggtaaaccggaactcgcccaaattac--tggggtaaa 111  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||           |  ||| |||||||||||||||||||||||   ||||||||    
T  20159334 aggggtgttttgtggagaatctttatattatagggttggaatctaaactttttttttacagggggaaaaccggaactcgcccaaattacaggggggtaaa 20159235  T
Q  112 gacatattaaccctta 127  Q
    ||||||||||||||||    
T  20159234 gacatattaaccctta 20159219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 49762698 - 49762569
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaaccnnnnnnnnnnaca---gggtaaaccggaactcgcccaaattac-tggggta 109  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |          |||   ||| |||||||||||||||||||||||  ||||||    
T  49762698 aggggtgttttgtggagaatctttatattatagggttggaatctaaa-cttttttttttacagcggggaaaaccggaactcgcccaaattacagggggta 49762600  T
Q  110 aagacatattaaccct-taaatatatatata 139  Q
    |||||||||||||||| || |||||||||||    
T  49762599 aagacatattaaccctatatatatatatata 49762569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 16829968 - 16829921
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  16829968 aggggtgttttgtggagaatctttatattatagggttggaatctaaac 16829921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 22059736 - 22059849
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaaccnnnnnnnnnnacagggtaaaccggaactcgcccaaattac-tggggtaaag 112  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||           |  ||||||| |||||||| ||||||||||  |||||||||    
T  22059736 aggggtgttttgtggagaatcttcatattatagggttggaatctaaactttttttttacagggggtaaatcggaactcacccaaattacagggggtaaag 22059835  T
Q  113 acatattaaccctt 126  Q
    ||||||||||||||    
T  22059836 acatattaaccctt 22059849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 46625735 - 46625782
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  46625735 aggggtgttttgtggagaatctttatattatagggttggaatctaaac 46625782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 49763713 - 49763774
Alignment:
Q  80 aaaccggaactcgcccaaattactgggg--taaagacatattaacccttaaatatatatata 139  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||| || |||||||||||    
T  49763713 aaaccggaactcgcccaaattacaggggggtaaagacatattaacccatatatatatatata 49763774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 36632268 - 36632316
Alignment:
Q  78 gtaaaccggaactcgcccaaattactggggtaaagacatattaaccctta 127  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||    
T  36632268 gtaaaccggaactcgcccaaattac-agggtaaagacatattaaccctta 36632316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 6668314 - 6668369
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactg--gggtaaagacatattaacccttaaa 129  Q
    ||||||||||||||||||||||||||| |  || ||||||||||||||||||||||    
T  6668314 gggtaaaccggaactcgcccaaattacaggtggctaaagacatattaacccttaaa 6668369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 10374183 - 10374131
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactgggg-taaagacatattaaccctta 127  Q
    ||||||||| ||||||||||||||||| |||| ||||||||||||||||||||    
T  10374183 gggtaaaccagaactcgcccaaattacaggggttaaagacatattaaccctta 10374131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 22058746 - 22058694
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactgggg-taaagacatattaaccctta 127  Q
    |||||||||| |||||||||||||||| |||| ||||||||||||||||||||    
T  22058746 gggtaaaccgaaactcgcccaaattacagggggtaaagacatattaaccctta 22058694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 27903067 - 27903020
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||| | |||||| ||||||||||||||||||||||||    
T  27903067 aggggtgttttgtgaagaatcttcatattatagggttggaatctaaac 27903020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 38132676 - 38132723
Alignment:
Q  79 taaaccggaactcgcccaaattac-tggggtaaagacatattaaccct 125  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  38132676 taaaccggaactcgcccaaattacagggggtaaagacatattaaccct 38132723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 45459719 - 45459766
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactggggtaaagacatattaacc 123  Q
    ||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  45459719 gggtaaatcggaactcgtccaaattacaggggtaaagacatattaacc 45459766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 48642172 - 48642125
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    ||||||||||| || | |||||||||||||||||||||||||||||||    
T  48642172 aggggtgttttttgaagaatctttatattatagggttggaatctaaac 48642125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 50962619 - 50962666
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||| | |||||| ||||||||||||||||||||||||    
T  50962619 aggggtgttttgtgaagaatcttcatattatagggttggaatctaaac 50962666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 17865684 - 17865737
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactggg--gtaaagacatattaaccctta 127  Q
    ||||||||||||||||||||||||||| |||  ||||| |||||||||||||||    
T  17865684 gggtaaaccggaactcgcccaaattacaggggagtaaatacatattaaccctta 17865737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 38174114 - 38174064
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactgg-ggtaaagacatattaaccct 125  Q
    |||||||||||||||||||||| |||| || ||||||||||||||||||||    
T  38174114 gggtaaaccggaactcgcccaagttacaggaggtaaagacatattaaccct 38174064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 21796165 - 21796113
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactg--gggtaaagacatattaaccctt 126  Q
    ||||||||||||| ||||||||||||| |  ||||||||||||||||||||||    
T  21796165 gggtaaaccggaattcgcccaaattacaggagggtaaagacatattaaccctt 21796113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 7378386 - 7378430
Alignment:
Q  17 ggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    ||||||||||||| |||||| |||||||||||||| |||||||||    
T  7378386 ggtgttttgtggagaatcttcatattatagggttgaaatctaaac 7378430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 16829900 - 16829849
Alignment:
Q  80 aaaccggaactcgcccaaattactgg--ggtaaagacatattaacccttaaa 129  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||| ||||    
T  16829900 aaaccggaactcgcccaaattacagggaggtaaagacatattaacccataaa 16829849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 16831065 - 16831112
Alignment:
Q  80 aaaccggaactcgcccaaattac--tggggtaaagacatattaaccct 125  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||    
T  16831065 aaaccggaactcgcccaaattacaagggggtaaagacatattaaccct 16831112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 17864887 - 17864836
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactggg--gtaaagacatattaaccct 125  Q
    ||||||||| ||||||||||||||||| |||  |||||||||||||||||||    
T  17864887 gggtaaaccagaactcgcccaaattacaggggtgtaaagacatattaaccct 17864836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 20160431 - 20160478
Alignment:
Q  80 aaaccggaactcgcccaaattac--tggggtaaagacatattaaccct 125  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||    
T  20160431 aaaccggaactcgcccaaattacaggggggtaaagacatattaaccct 20160478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 27903003 - 27902952
Alignment:
Q  76 gggtaaaccggaactcgcccaaatt--actggggtaaagacatattaaccct 125  Q
    |||||||||||||||||||||||||  |  ||||||||||||||||||||||    
T  27903003 gggtaaaccggaactcgcccaaattaaaggggggtaaagacatattaaccct 27902952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 9775863 - 9775906
Alignment:
Q  79 taaaccggaactcgcccaaattactggggtaaagacatattaac 122  Q
    |||||||||||||||| ||||||| |||||||||| ||||||||    
T  9775863 taaaccggaactcgcctaaattacaggggtaaagatatattaac 9775906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 21813848 - 21813894
Alignment:
Q  80 aaaccggaactcgcccaaattac--tggggtaaagacatattaaccc 124  Q
    |||||||||||||||||||||||   |||||||||||||||||||||    
T  21813848 aaaccggaactcgcccaaattacaggggggtaaagacatattaaccc 21813894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 27362161 - 27362207
Alignment:
Q  80 aaaccggaactcgcccaaattac--tggggtaaagacatattaaccc 124  Q
    |||||||||||||||||||||||   |||||||||||||||||||||    
T  27362161 aaaccggaactcgcccaaattacaggggggtaaagacatattaaccc 27362207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 48642109 - 48642062
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactggggtaaagacatattaacc 123  Q
    |||||||||| ||||||  |||||||| ||||||||||||||||||||    
T  48642109 gggtaaaccgaaactcgatcaaattacaggggtaaagacatattaacc 48642062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 48643347 - 48643398
Alignment:
Q  76 gggtaaaccggaactcgcccaaattac-tggggtaaagacatattaaccctt 126  Q
    ||||||||||||||||||| |||||||  |||||||| ||||||||||||||    
T  48643347 gggtaaaccggaactcgcctaaattacagggggtaaatacatattaaccctt 48643398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 39910694 - 39910648
Alignment:
Q  78 gtaaaccggaactcgcccaaattactggggtaaagacatattaaccc 124  Q
    |||||||| |||||||| ||||||| |||||||||||| ||||||||    
T  39910694 gtaaaccgaaactcgcctaaattacaggggtaaagacacattaaccc 39910648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 32975694 - 32975649
Alignment:
Q  16 gggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||| |||||| |||||||| ||||| |||||||||    
T  32975694 gggtgttttgtggagaatcttcatattataaggttgaaatctaaac 32975649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 45459259 - 45459210
Alignment:
Q  78 gtaaaccggaactcgcccaaattactgggg-taaagacatattaaccctt 126  Q
    ||||||||||||||| || |||||| |||| |||||||||||||||||||    
T  45459259 gtaaaccggaactcgtcccaattacagggggtaaagacatattaaccctt 45459210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 46625803 - 46625851
Alignment:
Q  80 aaaccggaactcgcccaaattactgggg--taaagacatattaaccctt 126  Q
    ||| ||||||||||||||||||| ||||  |||||||||||||||||||    
T  46625803 aaatcggaactcgcccaaattacaggggggtaaagacatattaaccctt 46625851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 27362112 - 27362140
Alignment:
Q  33 tctttatattatagggttggaatctaaac 61  Q
    |||||||||||||||||||||||||||||    
T  27362112 tctttatattatagggttggaatctaaac 27362140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 39896298 - 39896338
Alignment:
Q  87 aactcgcccaaattactggggtaaagacatattaaccctta 127  Q
    |||||||||||||||| ||| ||||||||||||||| ||||    
T  39896298 aactcgcccaaattacagggataaagacatattaactctta 39896338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 39911558 - 39911598
Alignment:
Q  87 aactcgcccaaattactggggtaaagacatattaaccctta 127  Q
    |||||||||||||||| ||| ||||||||||||||| ||||    
T  39911558 aactcgcccaaattacagggataaagacatattaactctta 39911598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 46624650 - 46624603
Alignment:
Q  80 aaaccggaactcgcccaaattactgggg--taaagacatattaaccct 125  Q
    |||||| |||||||||||||||| ||||  ||||||||||||||||||    
T  46624650 aaaccgaaactcgcccaaattacaggggggtaaagacatattaaccct 46624603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 28240780 - 28240665
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaaccnnnnnnnnnnaca---gggtaaaccggaactcgcccaaattac-tggggta 109  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |          |||   ||| |||||||||||||||||||||||  ||||||    
T  28240780 aggggtgttttgtggagaatctttatattatagggttggaatctaaa-cttttttttttacagaggggaaaaccggaactcgcccaaattacagggggta 28240682  T
Q  110 aagacatattaaccctt 126  Q
    |||||||||||||||||    
T  28240681 aagacatattaaccctt 28240665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 27250082 - 27250035
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  27250082 aggggtgttttgtggagaatctttatattatagggttggaatctaaac 27250035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 29674627 - 29674580
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  29674627 aggggtgttttgtggaaaatctttatattatagggttggaatctaaac 29674580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 39050053 - 39050006
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  39050053 aggggtgttttgtggagaatctttatattatagggttggaatctaaac 39050006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 11845767 - 11845717
Alignment:
Q  75 agggtaaaccggaactcgcccaaattactggggtaaagacatattaaccct 125  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  11845767 agggtaaaccagaactcgcccaaattactgggataaagacatattaaccct 11845717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 15992379 - 15992324
Alignment:
Q  76 gggtaaaccggaactcgcccaaattac--tggggtaaagacatattaacccttaaa 129  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  15992379 gggtaaaccggaactcgcccaaattacaggggggtaaagacatattaacccttaaa 15992324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 7468177 - 7468130
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||    
T  7468177 agggatgttttgtggagaatctttatattatagggttggaatctaaac 7468130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 128
Target Start/End: Complemental strand, 39174375 - 39174260
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaaccnnnnnnnnnnacaggg-taaaccggaactcgcccaaattactg-gggtaaa 111  Q
    |||||||||||||| | |||||| |||||||||| |||||||||||||           |||||| |||||| ||||||||||||||||| | |||||||    
T  39174375 aggggtgttttgtgaagaatcttcatattataggattggaatctaaac-ttttatttttacaggggtaaaccagaactcgcccaaattacagtgggtaaa 39174277  T
Q  112 gacatattaacccttaa 128  Q
    |||||||||||||||||    
T  39174276 gacatattaacccttaa 39174260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 11651389 - 11651340
Alignment:
Q  76 gggtaaaccggaactcgcccaaattac-tggggtaaagacatattaaccc 124  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||    
T  11651389 gggtaaaccggaactcgcccaaattacagggggtaaagacatattaaccc 11651340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 39050652 - 39050704
Alignment:
Q  80 aaaccggaactcgcccaaattactgggg--taaagacatattaacccttaaat 130  Q
    ||||||||||||||||||||||| ||||  |||||||||||||||||||||||    
T  39050652 aaaccggaactcgcccaaattacaggggggtaaagacatattaacccttaaat 39050704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 44377512 - 44377461
Alignment:
Q  76 gggtaaaccggaactcgcccaaattac--tggggtaaagacatattaaccct 125  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  44377512 gggtaaaccggaactcgcccaaattacaggggggtaaagacatattaaccct 44377461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 44386379 - 44386328
Alignment:
Q  76 gggtaaaccggaactcgcccaaattac--tggggtaaagacatattaaccct 125  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  44386379 gggtaaaccggaactcgcccaaattacaggggggtaaagacatattaaccct 44386328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 7468109 - 7468064
Alignment:
Q  80 aaaccggaactcgcccaaattac-tggggtaaagacatattaaccc 124  Q
    |||||||||||||||||||||||  |||||||||||||||||||||    
T  7468109 aaaccggaactcgcccaaattacagggggtaaagacatattaaccc 7468064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 27250014 - 27249958
Alignment:
Q  80 aaaccggaactcgcccaaattactg--gggtaaagacatattaacccttaaatatat 134  Q
    ||||||||||||||||||||||| |  |||||||||||||||| ||||| |||||||    
T  27250014 aaaccggaactcgcccaaattacagcggggtaaagacatattatccctttaatatat 27249958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 34461153 - 34461201
Alignment:
Q  80 aaaccggaactcgcccaaattactgg--ggtaaagacatattaaccctt 126  Q
    ||||||||||||||||||||||| ||  |||||||||||||||||||||    
T  34461153 aaaccggaactcgcccaaattacaggaaggtaaagacatattaaccctt 34461201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 44377574 - 44377529
Alignment:
Q  16 gggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||| ||| ||||||||||||||||| |||||||||    
T  44377574 gggtgttttgtggagaatttttatattatagggttgaaatctaaac 44377529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 44386441 - 44386396
Alignment:
Q  16 gggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||| ||| ||||||||||||||||| |||||||||    
T  44386441 gggtgttttgtggagaatttttatattatagggttgaaatctaaac 44386396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 48989328 - 48989275
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactgggg-taaagacatattaacccttaa 128  Q
    |||||||||| || ||||||||||||| |||| |||||||||||||||||||||    
T  48989328 gggtaaaccgaaagtcgcccaaattacagggggtaaagacatattaacccttaa 48989275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 11652487 - 11652531
Alignment:
Q  77 ggtaaaccggaactcgcccaaattactggggtaaagacatattaa 121  Q
    |||||||||||||||||||||||||  || |||||||||||||||    
T  11652487 ggtaaaccggaactcgcccaaattataggagtaaagacatattaa 11652531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 15993778 - 15993830
Alignment:
Q  76 gggtaaaccggaactcgcccaaattac-tggggtaaagacatattaaccctta 127  Q
    ||||||||||||||||||| |||||||  |||||||| |||||||||||||||    
T  15993778 gggtaaaccggaactcgcctaaattacagggggtaaatacatattaaccctta 15993830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 32042914 - 32043027
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaaccnnnnnnnnnnaca-gggtaaaccggaactcgcccaaattac-tggggtaaa 111  Q
    |||||||||||||| | |||||| |||||||||||||| |||||||| |          ||| |||||||||| |||||| |||||||||  ||||||||    
T  32042914 aggggtgttttgtgaagaatcttcatattatagggttgaaatctaaa-cttttatttttacaggggtaaaccgaaactcgtccaaattacagggggtaaa 32043012  T
Q  112 gacatattaaccctt 126  Q
    |||||||||||||||    
T  32043013 gacatattaaccctt 32043027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 8490852 - 8490899
Alignment:
Q  78 gtaaaccggaactcgcccaaattac-tggggtaaagacatattaaccc 124  Q
    ||||||||||||||||||||||||| | |||||||| |||||||||||    
T  8490852 gtaaaccggaactcgcccaaattacatagggtaaaggcatattaaccc 8490899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 11651452 - 11651405
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||||| |||||| |||||||| ||||| |||||||||    
T  11651452 aggggtgttttgtggagaatcttcatattatatggttgaaatctaaac 11651405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 35357565 - 35357518
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||| | |||||| ||||||||||||| ||||||||||    
T  35357565 aggggtgttttgtgaagaatcttcatattatagggttagaatctaaac 35357518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 37746170 - 37746123
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||| | |||||| |||| |||||||||||||||||||    
T  37746170 aggggtgttttgtgaagaatcttcatatgatagggttggaatctaaac 37746123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 44523536 - 44523582
Alignment:
Q  80 aaaccggaactcgcccaaattactgggg-taaagacatattaaccct 125  Q
    ||||| ||||||||||||||||| |||| ||||||||||||||||||    
T  44523536 aaaccagaactcgcccaaattacagggggtaaagacatattaaccct 44523582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 26906485 - 26906537
Alignment:
Q  75 agggtaaaccggaactcgcccaaattactgggg--taaagacatattaaccct 125  Q
    |||| ||| ||||||||||||||||||| ||||  ||||||||||||||||||    
T  26906485 agggaaaatcggaactcgcccaaattacagggggataaagacatattaaccct 26906537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 28395008 - 28395057
Alignment:
Q  76 gggtaaaccggaactcgcccaaattac-tggggtaaagacatattaaccc 124  Q
    |||||||||||||||||||||||||||  |||||||| || |||||||||    
T  28395008 gggtaaaccggaactcgcccaaattacggggggtaaatacgtattaaccc 28395057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 32041002 - 32040953
Alignment:
Q  76 gggtaaaccggaactcgcccaaattac-tggggtaaagacatattaaccc 124  Q
    ||||||||||||||||||| |||||||  |||||||| ||||||||||||    
T  32041002 gggtaaaccggaactcgcctaaattacagggggtaaatacatattaaccc 32040953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 37747432 - 37747481
Alignment:
Q  77 ggtaaaccggaactcgcccaaattac-tggggtaaagacatattaaccct 125  Q
    |||||||||||||||||| |||||||  |||||||| |||||||||||||    
T  37747432 ggtaaaccggaactcgcctaaattacagggggtaaatacatattaaccct 37747481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 15992439 - 15992395
Alignment:
Q  17 ggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    ||||||||||| | |||||| |||||||||||||| |||||||||    
T  15992439 ggtgttttgtgaagaatcttcatattatagggttgaaatctaaac 15992395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 21520548 - 21520508
Alignment:
Q  21 ttttgtggataatctttatattatagggttggaatctaaac 61  Q
    ||||||||| |||||| |||||||||||||||| |||||||    
T  21520548 ttttgtggagaatcttcatattatagggttggactctaaac 21520508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 27251131 - 27251178
Alignment:
Q  80 aaaccggaactcgcccaaat--tactggggtaaagacatattaaccct 125  Q
    ||||||||||||||||||||  ||  ||||||||||||||||||||||    
T  27251131 aaaccggaactcgcccaaattataggggggtaaagacatattaaccct 27251178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 38982224 - 38982177
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  38982224 aggggtgttttgtggagaatctttatattatagggttggaatctaaac 38982177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 39013321 - 39013274
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  39013321 aggggtgttttgtggagaatctttatattatagggttggaatctaaac 39013274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 9556946 - 9556992
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaa 60  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  9556946 aggggtgttttgtggagaatctttatattatagggttggaatctaaa 9556992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 4081816 - 4081861
Alignment:
Q  16 gggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  4081816 gggtgttttgtggagaatctttatattatagggttggaatctaaac 4081861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 4085965 - 4086010
Alignment:
Q  16 gggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  4085965 gggtgttttgtggagaatctttatattatagggttggaatctaaac 4086010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 33284426 - 33284378
Alignment:
Q  75 agggtaaaccggaactcgcccaaattactggggtaaagacatattaacc 123  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  33284426 agggtaaaccgaaactcgcccaaattacaggggtaaagacatattaacc 33284378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 26169312 - 26169265
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||    
T  26169312 aggggtgttttgtagagaatctttatattatagggttggaatctaaac 26169265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 44058197 - 44058314
Alignment:
Q  21 ttttgtggataatctttatattatagggttggaatctaaaccnnnnnnnnnnacagg---gtaaaccggaactcgcccaaattactgg-ggtaaagacat 116  Q
    ||||||||| |||||||||||||||||||||||||||||| |          |||||   | ||||||||||||||||||||||| || |||||||||||    
T  44058197 ttttgtggagaatctttatattatagggttggaatctaaa-cttttttttttacaggggaggaaaccggaactcgcccaaattacaggaggtaaagacat 44058295  T
Q  117 attaacccttaaatatata 135  Q
    ||||||||| |||| ||||    
T  44058296 attaaccctaaaatgtata 44058314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 14529680 - 14529631
Alignment:
Q  75 agggtaaaccggaactcgcccaaattac-tggggtaaagacatattaacc 123  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  14529680 agggtaaatcggaactcgcccaaattacatggggtaaagacatattaacc 14529631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 20164674 - 20164623
Alignment:
Q  76 gggtaaaccggaactcgcccaaattac--tggggtaaagacatattaaccct 125  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  20164674 gggtaaaccggaactcgcccaaattacaggggggtaaagacatattaaccct 20164623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 9555889 - 9555842
Alignment:
Q  80 aaaccggaactcgcccaaattac-tggggtaaagacatattaaccctt 126  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||    
T  9555889 aaaccggaactcgcccaaattacagggggtaaagacatattaaccctt 9555842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 43324999 - 43325046
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||| | |||||| ||||||||||||||||||||||||    
T  43324999 aggggtgttttgtgaagaatcttcatattatagggttggaatctaaac 43325046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 26169244 - 26169195
Alignment:
Q  80 aaaccggaactcgcccaaattactgggg--taaagacatattaaccctta 127  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  26169244 aaaccggaactcgcccaaattacaggggaataaagacatattaaccctta 26169195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 3777174 - 3777125
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactggggtaaagacatattaaccct 125  Q
    ||||||||||||||||| | ||||||| |||||||| |||||||||||||    
T  3777174 gggtaaaccggaactcgtctaaattacaggggtaaatacatattaaccct 3777125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 20164735 - 20164690
Alignment:
Q  16 gggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||| ||| ||||||||||||||||| |||||||||    
T  20164735 gggtgttttgtggagaatttttatattatagggttgaaatctaaac 20164690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 37124244 - 37124199
Alignment:
Q  79 taaaccggaactcgcccaaattactggggtaaagacatattaaccc 124  Q
    ||||| |||| ||||||||||||| |||||||||||||||||||||    
T  37124244 taaactggaattcgcccaaattacaggggtaaagacatattaaccc 37124199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 37482377 - 37482333
Alignment:
Q  17 ggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    ||||||||||||| |||||| |||||||| |||||||||||||||    
T  37482377 ggtgttttgtggagaatcttcatattataaggttggaatctaaac 37482333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 38983292 - 38983339
Alignment:
Q  80 aaaccggaactcgcccaaattac--tggggtaaagacatattaaccct 125  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||    
T  38983292 aaaccggaactcgcccaaattacaggggggtaaagacatattaaccct 38983339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 39014389 - 39014436
Alignment:
Q  80 aaaccggaactcgcccaaattac--tggggtaaagacatattaaccct 125  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||    
T  39014389 aaaccggaactcgcccaaattacaggggggtaaagacatattaaccct 39014436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 43325063 - 43325115
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactgggg-taaagacatattaaccctta 127  Q
    |||||||||||||||| | |||||||| |||| ||||||||||||||||||||    
T  43325063 gggtaaaccggaactcactcaaattacagggggtaaagacatattaaccctta 43325115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 37483394 - 37483449
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactgggg-taaagacatattaacccttaaat 130  Q
    ||||||||| ||||||| ||||||||| |||| |||||||||||||||||| ||||    
T  37483394 gggtaaaccagaactcgtccaaattacagggggtaaagacatattaaccctaaaat 37483449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 37871892 - 37871939
Alignment:
Q  79 taaaccggaactcgcccaaattactggggtaaagacatattaaccctt 126  Q
    ||||||||||||| |||||||||| ||| |||||||||| ||||||||    
T  37871892 taaaccggaactcacccaaattacagggctaaagacatactaaccctt 37871939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 13163286 - 13163240
Alignment:
Q  79 taaaccggaactcgcccaaattactggggtaaagacatattaaccct 125  Q
    ||||||||||||| || ||| ||| ||||||||||||||||||||||    
T  13163286 taaaccggaactcacctaaaatacaggggtaaagacatattaaccct 13163240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 26170407 - 26170453
Alignment:
Q  80 aaaccggaactcgcccaaattactgggg-taaagacatattaaccct 125  Q
    ||||||||||||||| ||||||| |||| ||||||||||||||||||    
T  26170407 aaaccggaactcgcctaaattacagggggtaaagacatattaaccct 26170453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 4081882 - 4081929
Alignment:
Q  80 aaaccggaactcgcccaaattac---tggggtaaagacatattaaccc 124  Q
    |||||||||||||||||||||||    |||||||||||||||||||||    
T  4081882 aaaccggaactcgcccaaattacagagggggtaaagacatattaaccc 4081929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 4086031 - 4086078
Alignment:
Q  80 aaaccggaactcgcccaaattac---tggggtaaagacatattaaccc 124  Q
    |||||||||||||||||||||||    |||||||||||||||||||||    
T  4086031 aaaccggaactcgcccaaattacagagggggtaaagacatattaaccc 4086078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 30680288 - 30680239
Alignment:
Q  76 gggtaaaccggaactcgcccaaattac-tggggtaaagacatattaaccc 124  Q
    |||||||| |||||||||||||||||| |||| || ||||||||||||||    
T  30680288 gggtaaactggaactcgcccaaattacatgggatagagacatattaaccc 30680239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 43323839 - 43323790
Alignment:
Q  76 gggtaaaccggaactcgcccaaattac-tggggtaaagacatattaaccc 124  Q
    ||||||||||||||||||| |||||||  |||||||| ||||||||||||    
T  43323839 gggtaaaccggaactcgcctaaattacagggggtaaatacatattaaccc 43323790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 9557015 - 9557059
Alignment:
Q  80 aaaccggaactcgcccaaattactggggtaaagacatattaaccc 124  Q
    |||||| |||||| ||||||||| ||| |||||||||||||||||    
T  9557015 aaaccgaaactcgtccaaattacagggataaagacatattaaccc 9557059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 38982156 - 38982109
Alignment:
Q  80 aaaccggaactcgcccaaattactgggg--taaagacatattaaccct 125  Q
    |||||| |||||||||||||||| ||||  ||||||||||||||||||    
T  38982156 aaaccgaaactcgcccaaattacaggggggtaaagacatattaaccct 38982109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 39013253 - 39013206
Alignment:
Q  80 aaaccggaactcgcccaaattactgggg--taaagacatattaaccct 125  Q
    |||||| |||||||||||||||| ||||  ||||||||||||||||||    
T  39013253 aaaccgaaactcgcccaaattacaggggggtaaagacatattaaccct 39013206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 44057187 - 44057140
Alignment:
Q  80 aaaccggaactcgcccaaattac--tggggtaaagacatattaaccct 125  Q
    |||||||||||||||||||||||   |||||||| |||||||||||||    
T  44057187 aaaccggaactcgcccaaattacaggggggtaaatacatattaaccct 44057140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 28189194 - 28189241
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  28189194 aggggtgttttgtggagaatctttatattatagggttggaatctaaac 28189241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 17139815 - 17139766
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactggggtaaagacatattaaccct 125  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  17139815 gggtaaaccggaactcgcccaaattacaggggtaaagacatgttaaccct 17139766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 34492360 - 34492474
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaaccnnnnnnnnnnaca--gggtaaaccggaactcgcccaaattactggg-gtaa 110  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||           |||  ||||||| ||||||||||||||||||| ||| ||||    
T  34492360 aggggtgttttgtggagaatctttatattatagggttgaaatctaaactttttttttttacagggggtaaatcggaactcgcccaaattacagggagtaa 34492459  T
Q  111 agacatattaaccct 125  Q
    | |||||||||||||    
T  34492460 aaacatattaaccct 34492474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 28564241 - 28564286
Alignment:
Q  16 gggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||    
T  28564241 gggtgttttgtggagaatctttatattatagggttgaaatctaaac 28564286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 18325590 - 18325539
Alignment:
Q  76 gggtaaaccggaactcgcccaaattac-tggggtaaagacatattaaccctt 126  Q
    |||||||||| ||||||||||||||||  |||||||||||||||||||||||    
T  18325590 gggtaaaccgaaactcgcccaaattacagggggtaaagacatattaaccctt 18325539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 20400191 - 20400129
Alignment:
Q  76 gggtaaaccggaactcgcccaaattact--ggggtaaagacatattaacccttaaatatatat 136  Q
    |||||||||| ||||||||||||||||   |||||||||||||||||||||| ||| ||||||    
T  20400191 gggtaaaccgaaactcgcccaaattacaagggggtaaagacatattaaccctaaaaaatatat 20400129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 5756406 - 5756460
Alignment:
Q  77 ggtaaaccggaactcgcccaaattactggggtaaagacatattaacccttaaata 131  Q
    |||||| ||||||||||||| ||||| | |||||||||||||||||| |||||||    
T  5756406 ggtaaatcggaactcgcccacattaccgtggtaaagacatattaaccattaaata 5756460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 29057404 - 29057450
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaa 60  Q
    |||||||||||||||| |||||| |||||||||||||| ||||||||    
T  29057404 aggggtgttttgtggagaatcttaatattatagggttgaaatctaaa 29057450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 29057497 - 29057543
Alignment:
Q  77 ggtaaaccggaactcgcccaaattactggggtaaagacatattaacc 123  Q
    ||||||||| |||||||||||||||| ||| ||||||||||||||||    
T  29057497 ggtaaaccgaaactcgcccaaattacagggataaagacatattaacc 29057543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 2405055 - 2405104
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactg-gggtaaagacatattaaccc 124  Q
    ||||||||||||||||||| ||||||| | ||||||||||||||||||||    
T  2405055 gggtaaaccggaactcgcctaaattacagagggtaaagacatattaaccc 2405104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 17184508 - 17184555
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||| | |||||| |||||||||||||| |||||||||    
T  17184508 aggggtgttttgtgaagaatcttcatattatagggttgaaatctaaac 17184555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 17141210 - 17141268
Alignment:
Q  79 taaaccggaactcgcccaaattactgggg-taaagacatattaacccttaaatatatat 136  Q
    |||||||||||||| | ||||||| |||| || ||||||||||||||||||| ||||||    
T  17141210 taaaccggaactcgactaaattacagggggtatagacatattaacccttaaaaatatat 17141268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 18325648 - 18325606
Alignment:
Q  19 tgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    ||||||||||| |||||| ||||||||||||| ||||||||||    
T  18325648 tgttttgtggagaatcttcatattatagggttcgaatctaaac 18325606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 2403724 - 2403672
Alignment:
Q  76 gggtaaaccggaactcgcccaaattac--tggggtaaagacatattaaccctt 126  Q
    ||||||||||||||||||| |||||||   |||||||| ||||||||||||||    
T  2403724 gggtaaaccggaactcgcctaaattacaggggggtaaatacatattaaccctt 2403672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 3587707 - 3587767
Alignment:
Q  79 taaaccggaactcgcccaaattactggggtaaagacatattaaccct-taaatatatatata 139  Q
    ||||||| |||| ||||||||||| |||||||||||||| ||||||| || |||||||||||    
T  3587707 taaaccgaaacttgcccaaattacaggggtaaagacata-taaccctatatatatatatata 3587767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 17139875 - 17139831
Alignment:
Q  16 gggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||| |||||| ||||||| ||||||||||||||||    
T  17139875 gggtgttttgtggagaatcttcatattat-gggttggaatctaaac 17139831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 28189258 - 28189310
Alignment:
Q  76 gggtaaaccggaactcgcccaaattac--tggggtaaagacatattaaccctt 126  Q
    |||||||| ||||||||||||||||||   |||||||| ||||||||||||||    
T  28189258 gggtaaactggaactcgcccaaattacaggggggtaaaaacatattaaccctt 28189310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 28743684 - 28743623
Alignment:
Q  79 taaaccggaactcgcccaaattactggggtaaagacatattaaccct-taaatatatatata 139  Q
    |||||||||||||||||||||||| | | ||||||||||| || ||| || |||||||||||    
T  28743684 taaaccggaactcgcccaaattacagtgctaaagacatataaatcctatatatatatatata 28743623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 2404994 - 2405038
Alignment:
Q  17 ggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    ||||||||||| | |||||| |||||||| |||||||||||||||    
T  2404994 ggtgttttgtgaagaatcttcatattataaggttggaatctaaac 2405038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 16841021 - 16841057
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggtt 50  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  16841021 aggggtgttttgtggagaatctttatattataaggtt 16841057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 17184570 - 17184621
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactg--gggtaaagacatattaaccct 125  Q
    |||||||||||| |||||||||||||| |  ||||||| |||||||||||||    
T  17184570 gggtaaaccggacctcgcccaaattaccgaagggtaaaaacatattaaccct 17184621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 17441428 - 17441392
Alignment:
Q  98 attactggggtaaagacatattaacccttaaatatat 134  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  17441428 attacaggggtaaagacctattaacccttaaatatat 17441392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 15248503 - 15248456
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  15248503 aggggtgttttgtggagaatctttatattatagggttggaatctaaac 15248456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 42744116 - 42744180
Alignment:
Q  76 gggtaaaccggaactcgcccaaattac-tggggtaaagacatattaacccttaaatatatatata 139  Q
    |||||||||| |||||||||||||||| |||||||||||| |||||||||||||| | |||||||    
T  42744116 gggtaaaccgaaactcgcccaaattacatggggtaaagacgtattaacccttaaaaaaatatata 42744180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 9894488 - 9894533
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaa 59  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||    
T  9894488 aggggtgttttgtggagaatcttcatattatagggttggaatctaa 9894533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 22286109 - 22286065
Alignment:
Q  17 ggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||||||||| |||||||||||||| |||||||||    
T  22286109 ggtgttttgtggataatcttcatattatagggttgaaatctaaac 22286065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 5202842 - 5202795
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||| | |||||| ||||||||||||||||||||||||    
T  5202842 aggggtgttttgtgaagaatcttcatattatagggttggaatctaaac 5202795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 15249552 - 15249612
Alignment:
Q  80 aaaccggaactcgcccaaattactgggg-taaagacatattaacccttaaatatatatata 139  Q
    ||||| ||||||||||||||||| |||| |||||||||||||||||  ||| |||||||||    
T  15249552 aaaccagaactcgcccaaattacagggggtaaagacatattaacccaaaaaaatatatata 15249612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 25979635 - 25979572
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactgggg-taaagacatattaacccttaaatatatatata 139  Q
    ||||||||||||| ||||||||||||| |||| ||||||||||||||||  || |||||||||||    
T  25979635 gggtaaaccggaa-tcgcccaaattacagggggtaaagacatattaacctatatatatatatata 25979572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 18695397 - 18695344
Alignment:
Q  76 gggtaaaccggaactcgcccaaatta---ctggggtaaagacatattaaccctt 126  Q
    ||||||||||||||||||||||||||     |||||||||||||||||||||||    
T  18695397 gggtaaaccggaactcgcccaaattagagggggggtaaagacatattaaccctt 18695344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 18748094 - 18748047
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    ||||||||| | |||| |||||| ||||||||||||||||||||||||    
T  18748094 aggggtgttctatggagaatcttcatattatagggttggaatctaaac 18748047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 18859182 - 18859139
Alignment:
Q  17 ggtgttttgtggataatctttatattatagggttggaatctaaa 60  Q
    ||||||||||||| |||||| |||||||||||||| ||||||||    
T  18859182 ggtgttttgtggagaatcttaatattatagggttgtaatctaaa 18859139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 25979698 - 25979651
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||| | |||||| |||||||||||||||| |||||||    
T  25979698 aggggtgttttgtgaagaatcttcatattatagggttggattctaaac 25979651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 43235939 - 43235894
Alignment:
Q  76 gggtaaaccggaactcgcccaaattactggggtaaagacatattaa 121  Q
    ||||||||||||||||| |||||||||   ||||||||||||||||    
T  43235939 gggtaaaccggaactcgtccaaattacataggtaaagacatattaa 43235894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 15248435 - 15248388
Alignment:
Q  80 aaaccggaactcgcccaaattac--tggggtaaagacatattaaccct 125  Q
    |||||||||||||||||||||||   ||||||||||||||||| ||||    
T  15248435 aaaccggaactcgcccaaattacaggggggtaaagacatattatccct 15248388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 18695461 - 18695417
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatcta 58  Q
    |||||||||||||| | |||| | |||||||||||||||||||||    
T  18695461 aggggtgttttgtgaagaatcatcatattatagggttggaatcta 18695417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 53485 - 53438
Alignment:
Q  14 aggggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||    
T  53485 aggggtgttttgtggagaatctttatattataaggttggaatctaaac 53438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 53417 - 53372
Alignment:
Q  80 aaaccggaactcgcccaaattactgggg-taaagacatattaaccc 124  Q
    |||||| |||||||||||||||| |||| |||||||||||||||||    
T  53417 aaaccgaaactcgcccaaattacagggggtaaagacatattaaccc 53372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 54518 - 54562
Alignment:
Q  80 aaaccggaactcgcccaaattac--tggggtaaagacatattaac 122  Q
    |||||||||||||||||||||||   |||||||||||||||||||    
T  54518 aaaccggaactcgcccaaattacaggggggtaaagacatattaac 54562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 18765 - 18816
Alignment:
Q  76 gggtaaaccggaactcgcccaaattac-tggggtaaagacatattaaccctt 126  Q
    |||||||||| ||||||||||||||||  |||||||||||||||||||||||    
T  18765 gggtaaaccgaaactcgcccaaattacagggggtaaagacatattaaccctt 18816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 18707 - 18749
Alignment:
Q  19 tgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    ||||||||||| |||||| ||||||||||||| ||||||||||    
T  18707 tgttttgtggagaatcttcatattatagggttcgaatctaaac 18749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 100916 - 100972
Alignment:
Q  76 gggtaaaccggaactcgcccaaattac--tggggtaaagacatattaacccttaaat 130  Q
    ||||||||||||||||||| |||||||   |||||||||||||||||||||| ||||    
T  100916 gggtaaaccggaactcgcctaaattacaggggggtaaagacatattaaccctaaaat 100972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 733 - 682
Alignment:
Q  76 gggtaaaccggaactcgcccaaattac-tggggtaaagacatattaaccctt 126  Q
    |||||||||||||||| ||||||||||  | |||||||||||||||||||||    
T  733 gggtaaaccggaactcacccaaattacaagaggtaaagacatattaaccctt 682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 794 - 750
Alignment:
Q  17 ggtgttttgtggataatctttatattatagggttggaatctaaac 61  Q
    ||||||||||| | |||||| |||||||| |||||||||||||||    
T  794 ggtgttttgtgaagaatcttcatattatatggttggaatctaaac 750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 18961 - 18915
Alignment:
Q  80 aaaccggaactcgcccaaattac--tggggtaaagacatattaaccc 124  Q
    |||||||||||||||||||||||   |||||||||||||||||||||    
T  18961 aaaccggaactcgcccaaattacaggggggtaaagacatattaaccc 18915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 42138 - 42090
Alignment:
Q  76 gggtaaaccggaactcgcccaaattac-tggggtaaagacatattaacc 123  Q
    ||||||||||||||||||| |||||||  |||||||| |||||||||||    
T  42138 gggtaaaccggaactcgcctaaattacagggggtaaatacatattaacc 42090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University