View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9884_low_21 (Length: 354)

Name: NF9884_low_21
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9884_low_21
NF9884_low_21
[»] chr6 (9 HSPs)
chr6 (93-202)||(10740746-10740855)
chr6 (99-220)||(13166606-13166727)
chr6 (91-203)||(9401768-9401880)
chr6 (2-38)||(18792843-18792879)
chr6 (1-31)||(9290661-9290691)
chr6 (1-38)||(9365107-9365144)
chr6 (1-38)||(22868535-22868572)
chr6 (1-38)||(28063008-28063045)
chr6 (2-38)||(28064663-28064699)
[»] chr7 (6 HSPs)
chr7 (110-206)||(17927758-17927854)
chr7 (3-38)||(46963064-46963099)
chr7 (1-38)||(6840606-6840643)
chr7 (1-38)||(15614250-15614287)
chr7 (1-38)||(26403521-26403558)
chr7 (1-38)||(46964418-46964455)
[»] chr2 (3 HSPs)
chr2 (1-38)||(8985648-8985685)
chr2 (1-38)||(8987001-8987038)
chr2 (154-203)||(30385430-30385479)
[»] chr4 (4 HSPs)
chr4 (88-203)||(24224708-24224824)
chr4 (1-38)||(16871725-16871762)
chr4 (1-51)||(24226123-24226171)
chr4 (1-32)||(37945558-37945589)
[»] chr1 (5 HSPs)
chr1 (3-38)||(6696091-6696126)
chr1 (1-38)||(15629347-15629384)
chr1 (1-41)||(2070734-2070774)
chr1 (1-176)||(2073227-2073402)
chr1 (1-176)||(2076759-2076934)
[»] chr3 (6 HSPs)
chr3 (1-50)||(814375-814422)
chr3 (1-38)||(30057159-30057196)
chr3 (1-34)||(42531363-42531396)
chr3 (1-33)||(46691454-46691486)
chr3 (93-131)||(22794305-22794343)
chr3 (93-131)||(22796070-22796108)
[»] scaffold0511 (1 HSPs)
scaffold0511 (2-38)||(11262-11298)
[»] chr8 (1 HSPs)
chr8 (93-131)||(5621847-5621885)
[»] scaffold0325 (1 HSPs)
scaffold0325 (1-38)||(14526-14563)
[»] chr5 (1 HSPs)
chr5 (1-34)||(24137672-24137705)


Alignment Details
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 202
Target Start/End: Original strand, 10740746 - 10740855
Alignment:
Q  93 ttgttgacatggcatcaagagcatggtttgatcctccttgaactgttcact-gcttccgctattgagttccctaaaatttgggaatgttgtgtgattgac 191  Q
    ||||| |||||| ||||||||||||||||||||||||||||| || ||  | ||||||||  |||||||||| ||| ||||||||||||||||||||||     
T  10740746 ttgttaacatggtatcaagagcatggtttgatcctccttgaa-tgatctgtcgcttccgcagttgagttcccaaaagtttgggaatgttgtgtgattgat 10740844  T
Q  192 ttggtttaatt 202  Q
    |||||||||||    
T  10740845 ttggtttaatt 10740855  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 99 - 220
Target Start/End: Original strand, 13166606 - 13166727
Alignment:
Q  99 acatggcatcaagagcatggtttgatcctccttgaactgttcact-gcttccgctattgagttccctaaaatttgggaatgttgtgtgattgacttggtt 197  Q
    |||||| ||||||||||| ||||||||| || |||| | || ||| ||||||||| ||| |||||| ||||||||||||| |||||||||||| ||||||    
T  13166606 acatggtatcaagagcatcgtttgatccgccgtgaattatt-actcgcttccgcttttgtgttcccaaaaatttgggaattttgtgtgattgatttggtt 13166704  T
Q  198 taatttcttgccttggtcttttg 220  Q
    |||||| | |  |||||||||||    
T  13166705 taatttatagtgttggtcttttg 13166727  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 91 - 203
Target Start/End: Original strand, 9401768 - 9401880
Alignment:
Q  91 tattgttgacatggcatcaagagcatggtttgatcctccttgaactgttcactgcttccgctattgagttccctaaaatttgggaatgttgtgtgattga 190  Q
    ||||||| |||||| ||| ||| | || | |||||||||||||||| ||     |||||| | |||||||||| ||||||||||||| ||||||||||||    
T  9401768 tattgttaacatggtatcgagaacttgttctgatcctccttgaactatttgtctcttccgttgttgagttcccaaaaatttgggaatattgtgtgattga 9401867  T
Q  191 cttggtttaattt 203  Q
     ||||||| ||||    
T  9401868 tttggtttgattt 9401880  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 18792879 - 18792843
Alignment:
Q  2 tatattctcttataaccttttgtaatgttaagctatt 38  Q
    ||||||||||||||||||||||||||||||| |||||    
T  18792879 tatattctcttataaccttttgtaatgttaaactatt 18792843  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 9290691 - 9290661
Alignment:
Q  1 atatattctcttataaccttttgtaatgtta 31  Q
    |||||||||||||||||||||||||||||||    
T  9290691 atatattctcttataaccttttgtaatgtta 9290661  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9365144 - 9365107
Alignment:
Q  1 atatattctcttataaccttttgtaatgttaagctatt 38  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  9365144 atatattctcttgtaaccttttgtaatgttaagttatt 9365107  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22868535 - 22868572
Alignment:
Q  1 atatattctcttataaccttttgtaatgttaagctatt 38  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  22868535 atatattctcttataactttttgtaatgttatgctatt 22868572  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28063045 - 28063008
Alignment:
Q  1 atatattctcttataaccttttgtaatgttaagctatt 38  Q
    |||||||||||  |||||||||||||||||||||||||    
T  28063045 atatattctctagtaaccttttgtaatgttaagctatt 28063008  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 28064699 - 28064663
Alignment:
Q  2 tatattctcttataaccttttgtaatgttaagctatt 38  Q
    ||||||||||  |||||||||||||||||||||||||    
T  28064699 tatattctctagtaaccttttgtaatgttaagctatt 28064663  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 206
Target Start/End: Complemental strand, 17927854 - 17927758
Alignment:
Q  110 agagcatggtttgatcctccttgaactgttcactgcttccgctattgagttccctaaaatttgggaatgttgtgtgattgacttggtttaatttctt 206  Q
    |||||||||||||||| || || || ||||    |||||||||||||||||  | ||| |||||||||||||||||||||| |||||||||||||||    
T  17927854 agagcatggtttgatcgtctttaaattgtttgtagcttccgctattgagttttcaaaagtttgggaatgttgtgtgattgatttggtttaatttctt 17927758  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 46963099 - 46963064
Alignment:
Q  3 atattctcttataaccttttgtaatgttaagctatt 38  Q
    ||||||||||||||||||||||||||||||||||||    
T  46963099 atattctcttataaccttttgtaatgttaagctatt 46963064  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 6840643 - 6840606
Alignment:
Q  1 atatattctcttataaccttttgtaatgttaagctatt 38  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  6840643 atatattcttttataaccttttgtaatgtaaagctatt 6840606  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15614287 - 15614250
Alignment:
Q  1 atatattctcttataaccttttgtaatgttaagctatt 38  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  15614287 atatattcttttataaccttttgtaatattaagctatt 15614250  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 26403521 - 26403558
Alignment:
Q  1 atatattctcttataaccttttgtaatgttaagctatt 38  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  26403521 atatattctcttataactttttgtaatgttatgctatt 26403558  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 46964455 - 46964418
Alignment:
Q  1 atatattctcttataaccttttgtaatgttaagctatt 38  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  46964455 atatattctcttataactttttgtaatattaagctatt 46964418  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8985648 - 8985685
Alignment:
Q  1 atatattctcttataaccttttgtaatgttaagctatt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8985648 atatattctcttataaccttttgtaatgttaagctatt 8985685  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8987001 - 8987038
Alignment:
Q  1 atatattctcttataaccttttgtaatgttaagctatt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8987001 atatattctcttataaccttttgtaatgttaagctatt 8987038  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 30385430 - 30385479
Alignment:
Q  154 ttgagttccctaaaatttgggaatgttgtgtgattgacttggtttaattt 203  Q
    |||||||||| ||| ||||| |||||||||||||||||||||||||||||    
T  30385430 ttgagttcccaaaattttggcaatgttgtgtgattgacttggtttaattt 30385479  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 203
Target Start/End: Original strand, 24224708 - 24224824
Alignment:
Q  88 ctatattgttgacatggcatcaagagcatggtttgatcctccttgaactgttcactgcttccgctattgagttccctaaaatttg-ggaatgttgtgtga 186  Q
    |||||||||| |||||| ||  | |||||| | | |||||| ||||| |||| |  |||| ||||||||||||||| ||| |||  ||||||||||||||    
T  24224708 ctatattgttaacatggtattcaaagcatgatctaatcctcattgaattgtttatcgctttcgctattgagttcccaaaagtttaaggaatgttgtgtga 24224807  T
Q  187 ttgacttggtttaattt 203  Q
    |||| ||||||||||||    
T  24224808 ttgatttggtttaattt 24224824  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16871725 - 16871762
Alignment:
Q  1 atatattctcttataaccttttgtaatgttaagctatt 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  16871725 atatattatcttataaccttttgtaatgttaagctatt 16871762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 24226123 - 24226171
Alignment:
Q  1 atatattctcttataaccttttgtaatgttaagctattttggtattctata 51  Q
    ||||||||||| |||||||||||||||||||| |||  |||||||||||||    
T  24226123 atatattctctaataaccttttgtaatgttaaacta--ttggtattctata 24226171  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 37945558 - 37945589
Alignment:
Q  1 atatattctcttataaccttttgtaatgttaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  37945558 atatattctcttataaccttttgtaatgttaa 37945589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 6696091 - 6696126
Alignment:
Q  3 atattctcttataaccttttgtaatgttaagctatt 38  Q
    ||||||||||||||||||||||||||||||||||||    
T  6696091 atattctcttataaccttttgtaatgttaagctatt 6696126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15629384 - 15629347
Alignment:
Q  1 atatattctcttataaccttttgtaatgttaagctatt 38  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  15629384 atatattctcttataaccttttgtaatattaagctatt 15629347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2070774 - 2070734
Alignment:
Q  1 atatattctcttataaccttttgtaatgttaagctattttg 41  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  2070774 atatattctcttataactttttgtaatgttatgctattttg 2070734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 2073402 - 2073227
Alignment:
Q  1 atatattctcttataaccttttgtaatgttaagctattttggtattctatatattgaaaccctagccgtctctttattctt--ttgaaa--ctatattgt 96  Q
    ||||||||||||||||| |||||||||| || ||||||||| |||     ||||||||| |||| ||| || ||| |||||  |||| |  ||| |||||    
T  2073402 atatattctcttataactttttgtaatgctatgctattttgttat----catattgaaaacctatccgcctatttgttctttattgataccctaaattgt 2073307  T
Q  97 tgacatggcatcaagagcatggtttgatcctccttgaactgttcactgcttccgctattgagttccctaaaatttgggaa 176  Q
    | |||||| ||| | ||||||||| ||||| |||||||||  |  | ||||||||||||||| |||| ||  ||||||||    
T  2073306 ttacatggtatcgatagcatggttcgatccgccttgaacttgttgccgcttccgctattgaggtcccaaatgtttgggaa 2073227  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 2076934 - 2076759
Alignment:
Q  1 atatattctcttataaccttttgtaatgttaagctattttggtattctatatattgaaaccctagccgtctctttattctt--ttgaaa--ctatattgt 96  Q
    ||||||||||||||||| |||||||||| || ||||||||| |||     ||||||||| |||| ||| || ||| |||||  |||| |  ||| |||||    
T  2076934 atatattctcttataactttttgtaatgctatgctattttgttat----catattgaaaacctatccgcctatttgttctttattgataccctaaattgt 2076839  T
Q  97 tgacatggcatcaagagcatggtttgatcctccttgaactgttcactgcttccgctattgagttccctaaaatttgggaa 176  Q
    | |||||| ||| | ||||||||| ||||| |||||||||  |  | ||||||||||||||| |||| ||  ||||||||    
T  2076838 ttacatggtatcgatagcatggttcgatccgccttgaacttgttgccgcttccgctattgaggtcccaaatgtttgggaa 2076759  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 814422 - 814375
Alignment:
Q  1 atatattctcttataaccttttgtaatgttaagctattttggtattctat 50  Q
    ||||||||||||||||||| ||||||||||||||||  ||||||||||||    
T  814422 atatattctcttataacctcttgtaatgttaagcta--ttggtattctat 814375  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30057159 - 30057196
Alignment:
Q  1 atatattctcttataaccttttgtaatgttaagctatt 38  Q
    |||||||||||||||| |||||||||||||||||||||    
T  30057159 atatattctcttataatcttttgtaatgttaagctatt 30057196  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 42531363 - 42531396
Alignment:
Q  1 atatattctcttataaccttttgtaatgttaagc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  42531363 atatattctcttataaccttttgtaatgttaagc 42531396  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 46691486 - 46691454
Alignment:
Q  1 atatattctcttataaccttttgtaatgttaag 33  Q
    |||||||||||||||||||||||||||||||||    
T  46691486 atatattctcttataaccttttgtaatgttaag 46691454  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 22794343 - 22794305
Alignment:
Q  93 ttgttgacatggcatcaagagcatggtttgatcctcctt 131  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  22794343 ttgttgacatggtatctagagcatggtttgatcctcctt 22794305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 22796108 - 22796070
Alignment:
Q  93 ttgttgacatggcatcaagagcatggtttgatcctcctt 131  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  22796108 ttgttgacatggtatctagagcatggtttgatcctcctt 22796070  T

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Target: scaffold0511 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 11262 - 11298
Alignment:
Q  2 tatattctcttataaccttttgtaatgttaagctatt 38  Q
    ||||||||||||||||||||||||||||||| |||||    
T  11262 tatattctcttataaccttttgtaatgttaaactatt 11298  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 5621847 - 5621885
Alignment:
Q  93 ttgttgacatggcatcaagagcatggtttgatcctcctt 131  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  5621847 ttgttgacatggtatctagagcatggtttgatcctcctt 5621885  T

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Target: scaffold0325 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 14563 - 14526
Alignment:
Q  1 atatattctcttataaccttttgtaatgttaagctatt 38  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  14563 atatattctcttataaccttttgtagtattaagctatt 14526  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 24137672 - 24137705
Alignment:
Q  1 atatattctcttataaccttttgtaatgttaagc 34  Q
    |||||||||||||||||||| |||||||||||||    
T  24137672 atatattctcttataaccttctgtaatgttaagc 24137705  T

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