View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9884_low_25 (Length: 324)

Name: NF9884_low_25
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9884_low_25
NF9884_low_25
[»] chr4 (7 HSPs)
chr4 (18-242)||(6903170-6903394)
chr4 (243-323)||(52189186-52189266)
chr4 (243-324)||(31410590-31410671)
chr4 (244-305)||(8479652-8479713)
chr4 (247-324)||(23545329-23545406)
chr4 (243-304)||(41780253-41780314)
chr4 (243-324)||(52190349-52190430)
[»] chr3 (5 HSPs)
chr3 (133-242)||(205099-205208)
chr3 (18-66)||(205221-205269)
chr3 (31-177)||(196883-197029)
chr3 (18-87)||(210145-210214)
chr3 (241-273)||(18939885-18939917)
[»] chr8 (5 HSPs)
chr8 (244-323)||(3872267-3872346)
chr8 (243-324)||(17863466-17863547)
chr8 (241-304)||(5005706-5005769)
chr8 (243-324)||(3870768-3870849)
chr8 (243-275)||(17864744-17864776)
[»] chr7 (2 HSPs)
chr7 (248-324)||(41741006-41741084)
chr7 (242-287)||(38516619-38516664)
[»] chr5 (3 HSPs)
chr5 (244-304)||(16727813-16727873)
chr5 (18-58)||(29838037-29838077)
chr5 (246-324)||(35967351-35967429)
[»] chr6 (2 HSPs)
chr6 (243-273)||(226121-226151)
chr6 (243-273)||(30758903-30758933)
[»] chr2 (1 HSPs)
chr2 (243-304)||(36669155-36669216)
[»] chr1 (1 HSPs)
chr1 (243-304)||(26529508-26529569)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 8e-95; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 6903170 - 6903394
Alignment:
Q  18 caatttaagtgacaacataaataactcaacatttactttaagccaaaaactacaaggtaaaattctcaccacaagatttcgcttagcaatttttgaataa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6903170 caatttaagtgacaacataaataactcaacatttactttaagccaaaaactacaaggtaaaattctcaccacaagatttcgcttagcaatttttgaacaa 6903269  T
Q  118 aataagggnnnnnnnggattgaattcattggcagcaacctctgcacttttaaaagcatgtccaaacctgattttgagctttgtcacatgactgccacttg 217  Q
    ||  | ||       |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  6903270 aaataagggttttttggattgaattcattggcagcaacctctgcatttttaaaagcatgtccaaacctgattttgagctttatcacttgactgccacttg 6903369  T
Q  218 tttcaaccctggaactttttctagg 242  Q
    |||||||||||||||||||||||||    
T  6903370 tttcaaccctggaactttttctagg 6903394  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 323
Target Start/End: Original strand, 52189186 - 52189266
Alignment:
Q  243 gagtaaaccctcatttgggtccttgaaagtgcacatttctatcagccgcgttcctgaatcaattaaactaatcaaaaactc 323  Q
    |||||||||||||||||||||| ||||||||||| |  ||||||||| | | |||| ||||||||||| ||||||||||||    
T  52189186 gagtaaaccctcatttgggtccctgaaagtgcacctcgctatcagccacatccctggatcaattaaacaaatcaaaaactc 52189266  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 324
Target Start/End: Complemental strand, 31410671 - 31410590
Alignment:
Q  243 gagtaaaccctcatttgggtccttgaaagtgcacatttctatcagccgcgttcctgaatcaattaaactaatcaaaaactcc 324  Q
    ||||||||||| |||| ||| | ||||||||||| |  ||||||| | |||||||||||||||||||| |||||||||||||    
T  31410671 gagtaaacccttatttaggttcctgaaagtgcacctcgctatcagacacgttcctgaatcaattaaacgaatcaaaaactcc 31410590  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 8479652 - 8479713
Alignment:
Q  244 agtaaaccctcatttgggtccttgaaagtgcacatttctatcagccgcgttcctgaatcaat 305  Q
    |||||| |||||||||||||| |||||||| |  || ||||||||| |||||||| ||||||    
T  8479652 agtaaatcctcatttgggtccctgaaagtgtatcttgctatcagccacgttcctggatcaat 8479713  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 324
Target Start/End: Complemental strand, 23545406 - 23545329
Alignment:
Q  247 aaaccctcatttgggtccttgaaagtgcacatttctatcagccgcgttcctgaatcaattaaactaatcaaaaactcc 324  Q
    ||||||||||||| ||||||||||||| || || ||||||| | |||  |||||||||  |||| || ||||||||||    
T  23545406 aaaccctcatttgagtccttgaaagtgtaccttgctatcagacacgtctctgaatcaagaaaacgaaccaaaaactcc 23545329  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 304
Target Start/End: Complemental strand, 41780314 - 41780253
Alignment:
Q  243 gagtaaaccctcatttgggtccttgaaagtgcacatttctatcagccgcgttcctgaatcaa 304  Q
    |||||||||||||||||||||  |||||||| || |  |||||| || ||||||||||||||    
T  41780314 gagtaaaccctcatttgggtctctgaaagtgtacctcgctatcaaccacgttcctgaatcaa 41780253  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 324
Target Start/End: Complemental strand, 52190430 - 52190349
Alignment:
Q  243 gagtaaaccctcatttgggtccttgaaagtgcacatttctatcagccgcgttcctgaatcaattaaactaatcaaaaactcc 324  Q
    |||||||||||||||||||||| ||||||||||  |  |||||||||   | | || ||||||||||| || ||||||||||    
T  52190430 gagtaaaccctcatttgggtccctgaaagtgcatctcgctatcagccagatccatggatcaattaaacgaaccaaaaactcc 52190349  T

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Target: chr3 (Bit Score: 94; Significance: 7e-46; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 205208 - 205099
Alignment:
Q  133 ggattgaattcattggcagcaacctctgcacttttaaaagcatgtccaaacctgattttgagctttgtcacatgactgccacttgtttcaaccctggaac 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| ||||    
T  205208 ggattgaattcattggcagcaacctctgcacttttaaaagcatgtccaaacctgattttgagctttatcacttgactgccaattgtttcaacccttgaac 205109  T
Q  233 tttttctagg 242  Q
    ||||||||||    
T  205108 tttttctagg 205099  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 205269 - 205221
Alignment:
Q  18 caatttaagtgacaacataaataactcaacatttactttaagccaaaaa 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  205269 caatttaagtgacaacataaataactcaacatttactttaagccaaaaa 205221  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 177
Target Start/End: Original strand, 196883 - 197029
Alignment:
Q  31 aacataaataactcaacatttactttaagccaaaaactacaaggtaaaattctcaccacaagatttcgcttagcaatttttgaataaaataagggnnnnn 130  Q
    ||||||||||||||||||| |||||||| |||||| ||| || ||||||| ||||||  |  |||  |||| || ||| ||||| ||||  | ||         
T  196883 aacataaataactcaacatatactttaaaccaaaagctataaagtaaaatcctcaccgtataattctgcttggcgattattgaacaaaaataagggtttt 196982  T
Q  131 nnggattgaattcattggcagcaacctctgcacttttaaaagcatgt 177  Q
      || |||||||||||||||||||||||||| ||| || ||||||||    
T  196983 ttggtttgaattcattggcagcaacctctgctcttgtagaagcatgt 197029  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 210145 - 210214
Alignment:
Q  18 caatttaagtgacaacataaataactcaacatttactttaagccaaaaactacaaggtaaaattctcacc 87  Q
    |||||| | |||||||| ||||||||||||  ||||||||| |||||||||| || |  |||||||||||    
T  210145 caatttcaatgacaacaaaaataactcaacgcttactttaaaccaaaaactataaagagaaattctcacc 210214  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 18939917 - 18939885
Alignment:
Q  241 gggagtaaaccctcatttgggtccttgaaagtg 273  Q
    |||||||||||||||||||||||| ||||||||    
T  18939917 gggagtaaaccctcatttgggtccctgaaagtg 18939885  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 3872346 - 3872267
Alignment:
Q  244 agtaaaccctcatttgggtccttgaaagtgcacatttctatcagccgcgttcctgaatcaattaaactaatcaaaaactc 323  Q
    ||||||||||| ||||||||| ||||||||||| |  ||||||||| ||| |||| ||||||||||| || |||||||||    
T  3872346 agtaaaccctcgtttgggtccctgaaagtgcacctcgctatcagccacgtccctgtatcaattaaacgaaccaaaaactc 3872267  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 17863466 - 17863547
Alignment:
Q  243 gagtaaaccctcatttgggtccttgaaagtgcacatttctatcagccgcgttcctgaatcaattaaactaatcaaaaactcc 324  Q
    |||||||||||||||||||||| ||||||||||| |  ||||||||| | | | || ||||||||||  || ||||||||||    
T  17863466 gagtaaaccctcatttgggtccctgaaagtgcacctcgctatcagccacatccttggatcaattaaataaaccaaaaactcc 17863547  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 5005706 - 5005769
Alignment:
Q  241 gggagtaaaccctcatttgggtccttgaaagtgcacatttctatcagccgcgttcctgaatcaa 304  Q
    |||||||||||||||||||||||| |||||||| || |  |||||| || ||| ||||||||||    
T  5005706 gggagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaa 5005769  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 3870768 - 3870849
Alignment:
Q  243 gagtaaaccctcatttgggtccttgaaagtgcacatttctatcagccgcgttcctgaatcaattaaactaatcaaaaactcc 324  Q
    ||||||||||||| |||||||| ||||| ||||  |  ||||||||| ||| |||  ||||||||| | |||||||||||||    
T  3870768 gagtaaaccctcacttgggtccctgaaaatgcatttcgctatcagccacgtccctagatcaattaagcgaatcaaaaactcc 3870849  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 275
Target Start/End: Complemental strand, 17864776 - 17864744
Alignment:
Q  243 gagtaaaccctcatttgggtccttgaaagtgca 275  Q
    |||||||||||||||||| ||||||||||||||    
T  17864776 gagtaaaccctcatttggttccttgaaagtgca 17864744  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 324
Target Start/End: Complemental strand, 41741084 - 41741006
Alignment:
Q  248 aaccctcatttgggtccttgaaagtgcacatt--tctatcagccgcgttcctgaatcaattaaactaatcaaaaactcc 324  Q
    ||||||||||||||||| ||||||| ||| ||  ||||||||| |||| || | |||||||||||||| ||||||||||    
T  41741084 aaccctcatttgggtccctgaaagttcaccttgctctatcagctgcgtccccggatcaattaaactaaccaaaaactcc 41741006  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 38516619 - 38516664
Alignment:
Q  242 ggagtaaaccctcatttgggtccttgaaagtgcacatttctatcag 287  Q
    ||||||||||||||||||||||| |||||||| ||||  |||||||    
T  38516619 ggagtaaaccctcatttgggtccctgaaagtgtacatcgctatcag 38516664  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 16727813 - 16727873
Alignment:
Q  244 agtaaaccctcatttgggtccttgaaagtgcacatttctatcagccgcgttcctgaatcaa 304  Q
    ||||||||||||||||||||  |||||||| || |  ||||||||| ||||||||||||||    
T  16727813 agtaaaccctcatttgggtcgctgaaagtgtacctcgctatcagccacgttcctgaatcaa 16727873  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 29838037 - 29838077
Alignment:
Q  18 caatttaagtgacaacataaataactcaacatttactttaa 58  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  29838037 caatttaagtggaaacataaataactcaacatttactttaa 29838077  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 324
Target Start/End: Original strand, 35967351 - 35967429
Alignment:
Q  246 taaaccctcatttgggtccttgaaagtgcacatttctatcagccgcgttcctgaatcaattaaactaatcaaaaactcc 324  Q
    ||||||||||||||| ||| ||||||| |||||   |||||||| | | |  |||||||||||||||| ||||||||||    
T  35967351 taaaccctcatttggatccctgaaagttcacatcgttatcagccacatcctcgaatcaattaaactaaccaaaaactcc 35967429  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 273
Target Start/End: Original strand, 226121 - 226151
Alignment:
Q  243 gagtaaaccctcatttgggtccttgaaagtg 273  Q
    |||||||||||||||||||||||||||||||    
T  226121 gagtaaaccctcatttgggtccttgaaagtg 226151  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 273
Target Start/End: Complemental strand, 30758933 - 30758903
Alignment:
Q  243 gagtaaaccctcatttgggtccttgaaagtg 273  Q
    |||||||||||||||||||||||||||||||    
T  30758933 gagtaaaccctcatttgggtccttgaaagtg 30758903  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 304
Target Start/End: Complemental strand, 36669216 - 36669155
Alignment:
Q  243 gagtaaaccctcatttgggtccttgaaagtgcacatttctatcagccgcgttcctgaatcaa 304  Q
    ||||||||||| |||||| ||| ||||||||||| |  ||||||||| ||| ||||||||||    
T  36669216 gagtaaaccctaatttggatccatgaaagtgcacctcgctatcagccacgtccctgaatcaa 36669155  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 26529508 - 26529569
Alignment:
Q  243 gagtaaaccctcatttgggtccttgaaagtgcacatttctatcagccgcgttcctgaatcaa 304  Q
    |||||||||||||||||||||| |||||||| || |  ||||||| | ||| ||||||||||    
T  26529508 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacgtccctgaatcaa 26529569  T

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