View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9884_low_27 (Length: 314)
Name: NF9884_low_27
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 14811884 - 14812173
Alignment:
| Q |
19 |
tctagcttaattttatagaacttgcttttgaacatgtcattgataaagaatacatcaccctcactaatgtttccattcattggcactttcttgattatat |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14811884 |
tctagcttaattttatagaacttgcttttgaacatgtcattgataaagaatacatcaccctcactaatgtttccattcattggcactttcttgattatat |
14811983 |
T |
|
| Q |
119 |
tttttccattcacgaaaaccatcgaatacaagcactttatcaaatccaaagaattaattttggttgcagtctcaatgtccttgtagcttagttgatcaat |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14811984 |
tttttccattcacgaaaaccatcgaatacaagcactttatcaaatccaaagaattaattttggttgcagtctcaatgtccttgtagcttagttgatcaat |
14812083 |
T |
|
| Q |
219 |
atcattaaacaacatcaggacacacatttgataagtagagacatgtaactcgtgcttacgaccatttccaaatgttgctattatctctgc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812084 |
atcattaaacaacatcaggacacacatttgataagtagagacatgtaactcgtgcttacgaccatttccaaatgttgctattatctctgc |
14812173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 15258879 - 15259168
Alignment:
| Q |
19 |
tctagcttaattttatagaacttgcttttgaacatgtcattgataaagaatacatcaccctcactaatgtttccattcattggcactttcttgattatat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15258879 |
tctagcttaattttatagaacttgcttttgaacatgtcattgataaagaatacatcaccctcactaatgtttccattcattggcactttcttgattatat |
15258978 |
T |
|
| Q |
119 |
tttttccattcacgaaaaccatcgaatacaagcactttatcaaatccaaagaattaattttggttgcagtctcaatgtccttgtagcttagttgatcaat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15258979 |
tttttccattcacgaaaaccatcgaatacaagcactttatcaaattcaaagaattaattttggttgcagtctcaatgtccttgtagcttagttgatcaat |
15259078 |
T |
|
| Q |
219 |
atcattaaacaacatcaggacacacatttgataagtagagacatgtaactcgtgcttacgaccatttccaaatgttgctattatctctgc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259079 |
atcattaaacaacatcaggacacacatttgataagtagagacatgtaactcgtgcttacgaccatttccaaatgttgctattatctctgc |
15259168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 20 - 308
Target Start/End: Original strand, 14804466 - 14804753
Alignment:
| Q |
20 |
ctagcttaattttatagaacttgcttttgaacatgtcattgataaagaatacatcaccctcactaatgtttccattcattggcactttcttgattatatt |
119 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||| ||||||||| ||||||||||||| |||||| ||| | || |||||| ||| ||||||||||||||| |
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|
| T |
14804466 |
ctagcttaatgttatagaactttcttgagaacgtgtcattgacaaagaatacatcatcctcaccaatatatcgattcatcggctgtttcttgattatatt |
14804565 |
T |
|
| Q |
120 |
ttttccattcacgaaaaccatcgaatacaagcactttatcaaatccaaagaattaattttggttgcagtctcaatgtccttgtagcttagttgatcaata |
219 |
Q |
| |
|
| || ||||| | | | || |||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||| | |
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| T |
14804566 |
tccccc-ttcacaagagcaatggaatacaagcactttatcaaatccaaggaattaattttggttgctttctcaatttccttgtagcttagttgatcaaca |
14804664 |
T |
|
| Q |
220 |
tcattaaacaacatcaggacacacatttgataagtagagacatgtaactcgtgcttacgaccatttccaaatgttgctattatctctgc |
308 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || |||||||||||||| || ||| ||||||| |||||||| |||||||||||||| |
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|
| T |
14804665 |
tcattaaacaacatcaagacacacatttgataggtggagacatgtaactcatgtttatgaccattcccaaatgtcgctattatctctgc |
14804753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 20 - 308
Target Start/End: Original strand, 15251460 - 15251747
Alignment:
| Q |
20 |
ctagcttaattttatagaacttgcttttgaacatgtcattgataaagaatacatcaccctcactaatgtttccattcattggcactttcttgattatatt |
119 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||| ||||||||| ||||||||||||| |||||| ||| | || |||||| ||| ||||||||||||||| |
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|
| T |
15251460 |
ctagcttaatgttatagaactttcttgagaacgtgtcattgacaaagaatacatcatcctcaccaatatatcgattcatcggctgtttcttgattatatt |
15251559 |
T |
|
| Q |
120 |
ttttccattcacgaaaaccatcgaatacaagcactttatcaaatccaaagaattaattttggttgcagtctcaatgtccttgtagcttagttgatcaata |
219 |
Q |
| |
|
| || ||||| | | | || |||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||| | |
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| T |
15251560 |
tccccc-ttcacaagagcaatggaatacaagcactttatcaaatccaaggaattaattttggttgctttctcaatttccttgtagcttagttgatcaaca |
15251658 |
T |
|
| Q |
220 |
tcattaaacaacatcaggacacacatttgataagtagagacatgtaactcgtgcttacgaccatttccaaatgttgctattatctctgc |
308 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || |||||||||||||| || ||| ||||||| |||||||| |||||||||||||| |
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|
| T |
15251659 |
tcattaaacaacatcaagacacacatttgataggtggagacatgtaactcatgtttatgaccattcccaaatgtcgctattatctctgc |
15251747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 297
Target Start/End: Original strand, 14749046 - 14749154
Alignment:
| Q |
189 |
ctcaatgtccttgtagcttagttgatcaatatcattaaacaacatcaggacacacatttgataagtagagacatgtaactcgtgcttacgaccatttcca |
288 |
Q |
| |
|
|||||| ||| |||||||||| |||| || |||||||| ||| || |||||||||||||| ||||| |||| |||||| || || ||||||| ||| |
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| T |
14749046 |
ctcaatttccctgtagcttagcctatcagcattattaaacagcatgagtacacacatttgataggtagaaacatttaactcatgtttctgaccattccca |
14749145 |
T |
|
| Q |
289 |
aatgttgct |
297 |
Q |
| |
|
|| |||||| |
|
|
| T |
14749146 |
aaagttgct |
14749154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 17522296 - 17522007
Alignment:
| Q |
19 |
tctagcttaattttatagaacttgcttttgaacatgtcattgataaagaatacatcaccctcactaatgtttccattcattggcactttcttgattatat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17522296 |
tctagcttaattttatagaacttgcttttgaacatgtcattgataaagaatacatcaccctcactaatgtttccattcattggcactttcttgattatat |
17522197 |
T |
|
| Q |
119 |
tttttccattcacgaaaaccatcgaatacaagcactttatcaaatccaaagaattaattttggttgcagtctcaatgtccttgtagcttagttgatcaat |
218 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17522196 |
tttttccattcacgaaaaccatggaatacaagcactttatcaaattcaaagaattaattttggttgcagtctcaatgtccttgtagcttagttgatcaat |
17522097 |
T |
|
| Q |
219 |
atcattaaacaacatcaggacacacatttgataagtagagacatgtaactcgtgcttacgaccatttccaaatgttgctattatctctgc |
308 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17522096 |
agcattaaacaacatcaggacacacatttgataagtagagacatgtaactcgtgcttacgaccatttccaaatgttgctattatctctgc |
17522007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 17533650 - 17533436
Alignment:
| Q |
21 |
tagcttaattttatagaacttgcttttgaacatgtcattgataaagaatacatcaccctcactaatgtttccattcattggcactttcttgattatattt |
120 |
Q |
| |
|
|||||||| |||||||||||| ||| || | |||||||| ||||||||||||| |||||| ||| | ||||||||| ||| ||||||||||||||||| |
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|
| T |
17533650 |
tagcttaactttatagaacttacttgagacctagtcattgacaaagaatacatcatcctcaccaatatatccattcatcggctctttcttgattatattt |
17533551 |
T |
|
| Q |
121 |
tttccattcacgaaaaccatcgaatacaagcactttatcaaatccaaagaattaattttggttgcagtctcaatgtccttgtagcttagttgatcaatat |
220 |
Q |
| |
|
| ||||||| | |||| ||||||||||||||||| |||||||| ||||||||||| ||||| ||||||| |||||||||||||||||||||| || |
|
|
| T |
17533550 |
ccatccttcacgagagccatggaatacaagcactttattaaatccaaggaattaattttcgttgctttctcaatttccttgtagcttagttgatcaacat |
17533451 |
T |
|
| Q |
221 |
cattaaacaacatca |
235 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
17533450 |
cattaaacaacatca |
17533436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 17621153 - 17621231
Alignment:
| Q |
189 |
ctcaatgtccttgtagcttagttgatcaatatcattaaacaacatcaggacacacatttgataagtagagacatgtaac |
267 |
Q |
| |
|
|||||| ||||||||||||||| |||| || |||||||| ||| || |||||||||||||| || ||||||| |||| |
|
|
| T |
17621153 |
ctcaatttccttgtagcttagtctatcagcattattaaacagcatgagtacacacatttgataggtggagacatttaac |
17621231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 44901895 - 44901826
Alignment:
| Q |
19 |
tctagcttaattttatagaacttgcttttgaacatgtcattgataaagaatacatcaccctcactaatgt |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
44901895 |
tctagcttaattttatagaacttgcttttgaacatgtcattgacaaagaacacatcaccctcactaatgt |
44901826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 297
Target Start/End: Original strand, 24394515 - 24394623
Alignment:
| Q |
189 |
ctcaatgtccttgtagcttagttgatcaatatcattaaacaacatcaggacacacatttgataagtagagacatgtaactcgtgcttacgaccatttcca |
288 |
Q |
| |
|
|||||| ||||||||||| |||| |||| || ||| || | ||| |||||||||||||| || |||||||||| |||||| ||||| |||| || ||| |
|
|
| T |
24394515 |
ctcaatctccttgtagctaagtttatcagcattattgaaaagcataaggacacacatttggtaggtagagacatttaactcatgcttctgacccttccca |
24394614 |
T |
|
| Q |
289 |
aatgttgct |
297 |
Q |
| |
|
|| |||||| |
|
|
| T |
24394615 |
aaggttgct |
24394623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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