View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9884_low_28 (Length: 299)
Name: NF9884_low_28
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 283
Target Start/End: Complemental strand, 47391695 - 47391427
Alignment:
| Q |
13 |
aaggggctgtgaactcggagctgagtaaatttcgtgacttgaatcttgatgaaaatttggagtttgtggctgaggatcagaaggatgaggtgatagtgag |
112 |
Q |
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| T |
47391695 |
aaggggctgtgaactcggagctgagtaaatttcgtgacttgaatcttgatgaaaatttggagtttgtggctgaggatcagaaggatgaggtgatagtgag |
47391596 |
T |
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| Q |
113 |
tatatttcatcagataaaggatttggaaaaacaggccaagcagcggaaagaatggggtgggcatatcaaaaagcattgcaggccgcaaagaagctaagca |
212 |
Q |
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| T |
47391595 |
tatatttcatcagataaaggatttggaaaaacaggccaagcagcggaaagaat-gggtgggcatatcagaaagcattgcaggccgcaaagaagctaagca |
47391497 |
T |
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| Q |
213 |
gtgatttgactgagctcaaaacattacggatggatagagaggagacccagaaattgaagaaagggaaacag |
283 |
Q |
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| T |
47391496 |
gtgatttgactgagctcaaaacattatggatggatagagaggaga-ccagaaattgaagaaagggaaacag |
47391427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 283
Target Start/End: Original strand, 40624442 - 40624703
Alignment:
| Q |
17 |
ggctgtgaactcggagctgagtaaatttcgtgacttgaatcttgatgaaaatttggagtttgtggctgaggatcagaaggatgaggtgatagtgagtata |
116 |
Q |
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| T |
40624442 |
ggctgtgaactcggtgctgagtaaatttcgtgacttgaatcttgatgaaaatttggagtttgtggctgaggatcagaaggatgaagtgatagtgagtata |
40624541 |
T |
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| Q |
117 |
tttcatcagataaaggatttggaaaaacaggccaagcagcggaaagaatggggtgggcatatcaaaaagcattgcaggccgcaaagaagctaagcagtga |
216 |
Q |
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| T |
40624542 |
tttcatcagataaaggatttggaaaaacaggccaaggagcggaaagaatgggct-----tatcagaaagcattgcaggccgcgaagaagctaagcagtga |
40624636 |
T |
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| Q |
217 |
tttgactgagctcaaaacattacggatggatagagaggagacccagaaattgaagaaagggaaacag |
283 |
Q |
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| T |
40624637 |
tttgaccgagctcaaaacattacggatggatagagaggagacccagaaattgaagaaagggaaacag |
40624703 |
T |
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