View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9884_low_3 (Length: 511)
Name: NF9884_low_3
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Original strand, 26483910 - 26484402
Alignment:
| Q |
1 |
gaatacaaagttgaaaaatagagaaaattgtgacgatgttggttccaaggaaaattcaaaaggttcagagattcaaaatcataagcctgattacattcat |
100 |
Q |
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| T |
26483910 |
gaatacaaagttgaaaaatagagaaaattgtgatgatgttggttccaaggaaaattcaaaaggttcagagattcaaaatcataagcctgattacattcat |
26484009 |
T |
|
| Q |
101 |
gttcgagcacgtcgtggtcaagctactgatagtcatagcttagctgaaagagtgagtacacaattcttatctttcactatttttctcttaatttgtcatt |
200 |
Q |
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| T |
26484010 |
gttcgagcacgtcgtggtcaagctactgatagtcatagcttagctgaaagagtgagtacacaattcttatctttcactatttttctcttaatttgtcatt |
26484109 |
T |
|
| Q |
201 |
atttggttaacaaaatgtgattatcaatacactcataatatgtatgattataaaagttattccaacgatcatgattgattgatagtgtaaaaacatttta |
300 |
Q |
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| T |
26484110 |
atttggttaacaaaatgtgattatcaatacactcataatatgtatgattataaaagttattccaacgatcatgattgattgatagtgtaaaaacatttta |
26484209 |
T |
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| Q |
301 |
catataacaattttttaatatggtttaatgctaaaattaccgttaataggaggtagaatctgttttaacaatatagatagtttctacaatgaaatcaaat |
400 |
Q |
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| T |
26484210 |
catataacaattttttaatatggtttaatgctaaaataaccgttaataggaggtagaatctgttttaacaatatagatagtttctacaatgaaatcaaat |
26484309 |
T |
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| Q |
401 |
aaacatttattttgtgcaatagaatatgatttttcggtttactacttggagtttaaagtccaatgtttgtttgttctgttttgtgcaggttag |
493 |
Q |
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| T |
26484310 |
agacatttattttgtacaatagaatatgatttttcggtttactacttggagtttaaagtccaatgtttgtttgttctgttttgtgcaggttag |
26484402 |
T |
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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 87 - 158
Target Start/End: Original strand, 54615828 - 54615899
Alignment:
| Q |
87 |
ctgattacattcatgttcgagcacgtcgtggtcaagctactgatagtcatagcttagctgaaagagtgagta |
158 |
Q |
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||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||| |||| |
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| T |
54615828 |
ctgattacattcatgttcgagcacgtcgtggccaagccaccgacagtcatagcttagctgaaagagtaagta |
54615899 |
T |
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