View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9884_low_30 (Length: 288)

Name: NF9884_low_30
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9884_low_30
NF9884_low_30
[»] chr4 (6 HSPs)
chr4 (11-149)||(26341277-26341415)
chr4 (11-149)||(43461329-43461467)
chr4 (196-272)||(26341161-26341237)
chr4 (196-272)||(43461216-43461292)
chr4 (11-48)||(26336001-26336038)
chr4 (11-48)||(43460603-43460640)
[»] chr6 (2 HSPs)
chr6 (11-149)||(24063873-24064011)
chr6 (206-273)||(24064060-24064127)
[»] chr8 (2 HSPs)
chr8 (11-149)||(31286258-31286396)
chr8 (214-272)||(31286440-31286498)
[»] chr5 (7 HSPs)
chr5 (11-149)||(6052502-6052642)
chr5 (11-145)||(12698050-12698184)
chr5 (196-272)||(6052389-6052465)
chr5 (196-272)||(12697934-12698010)
chr5 (23-77)||(19119652-19119706)
chr5 (11-48)||(6051776-6051813)
chr5 (16-48)||(12697331-12697363)
[»] chr1 (1 HSPs)
chr1 (31-63)||(34919103-34919135)
[»] chr7 (2 HSPs)
chr7 (23-77)||(32949817-32949871)
chr7 (27-68)||(17917635-17917676)
[»] chr2 (1 HSPs)
chr2 (27-77)||(32394298-32394348)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 26341415 - 26341277
Alignment:
Q  11 caaaggagaggaagtgttataatgagagggtgagaggaatagattatgacccttggatgaaaatgaacagtccagattaaaaggttcacttaaacaatgc 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26341415 caaatgagaggaagtgttataatgagagggtgagaggaatagattatgacccttggatgaaaatgaacagtccagattaaaaggttcacttaaacaatgc 26341316  T
Q  111 acgtgacttttttggttggtctacgtgcttgctgcctgc 149  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26341315 acgtgacttttttggttggtctacgtgcttgctgcctgc 26341277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 43461467 - 43461329
Alignment:
Q  11 caaaggagaggaagtgttataatgagagggtgagaggaatagattatgacccttggatgaaaatgaacagtccagattaaaaggttcacttaaacaatgc 110  Q
    |||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  43461467 caaatgagaggaagtgttataatgagaaggtgggaggaatagattatgacccttggatgaaaatgaacagtccaaattaaaaggttcacttaaacaatgc 43461368  T
Q  111 acgtgacttttttggttggtctacgtgcttgctgcctgc 149  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  43461367 acgtgacttttgtggttggtctacgtgcttgctgcctgc 43461329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 196 - 272
Target Start/End: Complemental strand, 26341237 - 26341161
Alignment:
Q  196 agaaacttgtgttagcttatgttcctgttctttgattttcttgtgtgctttcctcccaacaatctagactaataacc 272  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26341237 agaaacttgcgttagcttatgttcctgttctttgattttcttgtgtgctttcctcccaacaatctagactaataacc 26341161  T

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Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 196 - 272
Target Start/End: Complemental strand, 43461292 - 43461216
Alignment:
Q  196 agaaacttgtgttagcttatgttcctgttctttgattttcttgtgtgctttcctcccaacaatctagactaataacc 272  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43461292 agaaacttgcgttagcttatgttcctgttctttgattttcttgtgtgctttcctcccaacaatctagactaataacc 43461216  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 26336001 - 26336038
Alignment:
Q  11 caaaggagaggaagtgttataatgagagggtgagagga 48  Q
    |||| |||||||||||||||||||||||||||||||||    
T  26336001 caaatgagaggaagtgttataatgagagggtgagagga 26336038  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 43460603 - 43460640
Alignment:
Q  11 caaaggagaggaagtgttataatgagagggtgagagga 48  Q
    |||| |||||||||||||||||||||||||||||||||    
T  43460603 caaatgagaggaagtgttataatgagagggtgagagga 43460640  T

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Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 24063873 - 24064011
Alignment:
Q  11 caaaggagaggaagtgttataatgagagggtgagaggaatagattatgacccttggatgaaaatgaacagtccagattaaaaggttcacttaaacaatgc 110  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24063873 caaatgagaggaagtgttataatgagagggtgagaggaatatattatgacccttggatgaaaatgaacagtccagattaaaaggttcacttaaacaatgc 24063972  T
Q  111 acgtgacttttttggttggtctacgtgcttgctgcctgc 149  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24063973 acgtgacttttttggttggtctacgtgcttgctgcctgc 24064011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 24064060 - 24064127
Alignment:
Q  206 gttagcttatgttcctgttctttgattttcttgtgtgctttcctcccaacaatctagactaataacct 273  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24064060 gttagcttatgttcttgttctttgattttcttgtgtgctttcctcccaacaatctagactaataacct 24064127  T

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Target: chr8 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 31286258 - 31286396
Alignment:
Q  11 caaaggagaggaagtgttataatgagagggtgagaggaatagattatgacccttggatgaaaatgaacagtccagattaaaaggttcacttaaacaatgc 110  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31286258 caaatgagagaaagtgttataatgagagggtgagaggaatagattatgactcttgaatgaaaatgaacagtccagattaaaaggttcacttaaacaatgc 31286357  T
Q  111 acgtgacttttttggttggtctacgtgcttgctgcctgc 149  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  31286358 acgtgacttttttggttggtctacgcgcttgctgcctgc 31286396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 214 - 272
Target Start/End: Original strand, 31286440 - 31286498
Alignment:
Q  214 atgttcctgttctttgattttcttgtgtgctttcctcccaacaatctagactaataacc 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31286440 atgttcctgttctttgattttcttgtgtgctttcctcccaacaatctagactaataacc 31286498  T

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Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 6052642 - 6052502
Alignment:
Q  11 caaaggagaggaagtgttataatgagagggtgagaggaatagattatgacccttggatgaaaatgaacagtccagattaaaaggttcacttaaacaa--t 108  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  6052642 caaatgagaggaagtgttataatgagagagtgagaggaatagattatgacccttggatgaaaatgaacagtccagattaaaaggttcacttaaacaatgt 6052543  T
Q  109 gcacgtgacttttttggttggtctacgtgcttgctgcctgc 149  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  6052542 gcacgtgacttttttggttggtctacgcgcttgctgcctgc 6052502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 12698184 - 12698050
Alignment:
Q  11 caaaggagaggaagtgttataatgagagggtgagaggaatagattatgacccttggatgaaaatgaacagtccagattaaaaggttcacttaaacaatgc 110  Q
    |||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  12698184 caaatgagaggaagtgttataatgagaggctgagaggaatagactatgacccttgcatgaaaatgaacagtccagattaaaaggttcacttaaacaatga 12698085  T
Q  111 acgtgacttttttggttggtctacgtgcttgctgc 145  Q
    ||||||||||||||||||||||||| | |||||||    
T  12698084 acgtgacttttttggttggtctacgcggttgctgc 12698050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 196 - 272
Target Start/End: Complemental strand, 6052465 - 6052389
Alignment:
Q  196 agaaacttgtgttagcttatgttcctgttctttgattttcttgtgtgctttcctcccaacaatctagactaataacc 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6052465 agaaacttgtgttagcttatgttcctgttctttgattttcttgtgtgctttcctcccaacaatctagactattaacc 6052389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 196 - 272
Target Start/End: Complemental strand, 12698010 - 12697934
Alignment:
Q  196 agaaacttgtgttagcttatgttcctgttctttgattttcttgtgtgctttcctcccaacaatctagactaataacc 272  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12698010 agaaacttgcgttagcttatgttcctgttctttgattttcttgtgtgctttcctcccaacaatctagactaataacc 12697934  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 19119706 - 19119652
Alignment:
Q  23 agtgttataatgagagggtgagaggaatagattatgacccttggatgaaaatgaa 77  Q
    ||||||||||||||||| ||||||||||| || ||||||||| ||| ||||||||    
T  19119706 agtgttataatgagaggatgagaggaataaataatgacccttagattaaaatgaa 19119652  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 6051776 - 6051813
Alignment:
Q  11 caaaggagaggaagtgttataatgagagggtgagagga 48  Q
    |||| |||||||||||||||||||||||||||||||||    
T  6051776 caaatgagaggaagtgttataatgagagggtgagagga 6051813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 12697331 - 12697363
Alignment:
Q  16 gagaggaagtgttataatgagagggtgagagga 48  Q
    |||||||||||||||||||||||||||||||||    
T  12697331 gagaggaagtgttataatgagagggtgagagga 12697363  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 34919135 - 34919103
Alignment:
Q  31 aatgagagggtgagaggaatagattatgaccct 63  Q
    |||||||||||||||||||||||||||||||||    
T  34919135 aatgagagggtgagaggaatagattatgaccct 34919103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 32949871 - 32949817
Alignment:
Q  23 agtgttataatgagagggtgagaggaatagattatgacccttggatgaaaatgaa 77  Q
    ||||||||||||||||| ||||||||||| || |||||||||  || ||||||||    
T  32949871 agtgttataatgagaggatgagaggaataaataatgacccttaaattaaaatgaa 32949817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 17917635 - 17917676
Alignment:
Q  27 ttataatgagagggtgagaggaatagattatgacccttggat 68  Q
    |||| ||||||||||||||||||||||| |||||| ||||||    
T  17917635 ttattatgagagggtgagaggaatagataatgaccgttggat 17917676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 32394298 - 32394348
Alignment:
Q  27 ttataatgagagggtgagaggaatagattatgacccttggatgaaaatgaa 77  Q
    ||||||||||||| ||||||||| | || ||||||||||||| ||||||||    
T  32394298 ttataatgagaggatgagaggaacatataatgacccttggattaaaatgaa 32394348  T

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