View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9884_low_32 (Length: 268)
Name: NF9884_low_32
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_low_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 128 - 254
Target Start/End: Original strand, 36724252 - 36724378
Alignment:
| Q |
128 |
actgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttctaagagcatccacatctttcacaaagtctagagaaaaatctgt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
36724252 |
actgtctacaagcatctataatgcatctaaattcactactatcttatatgcttgttctaagagcatccacatccttcacagagtctagagaaaaatctgt |
36724351 |
T |
|
| Q |
228 |
attatcaaattgaaggtctgatgtcca |
254 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
36724352 |
attatcaaattgaaggtctgatgtcca |
36724378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 36723769 - 36723895
Alignment:
| Q |
15 |
cataggtgtgggagttagtattatgtgggactatctgagctaactcatgagcaacctcattagcctgactttattaaactcaatttgagagttttgaaat |
114 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| | |||||| |||||| |||||||||||| || ||||||||||||| |
|
|
| T |
36723769 |
cataggtgtgagagctagtattatgtgggactatctgagctaactcgtgagcaatcccattagtctgactctattaaactcaacttaagagttttgaaat |
36723868 |
T |
|
| Q |
115 |
ctactatgaaataactgtctacaagca |
141 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
36723869 |
ctactatgaaataactgtctacaagca |
36723895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 255
Target Start/End: Complemental strand, 712314 - 712145
Alignment:
| Q |
86 |
tattaaactcaatttgagagttttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttct |
185 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| | ||||| |||| |||||| ||| |||||| |||| |||||||| | |||||| || | |||||| |
|
|
| T |
712314 |
tattaaactcaacatgagagttttaaaatctattttgaaacaactatctacatgcaagtataatacatccaaattcacaactatcttctacacatgttct |
712215 |
T |
|
| Q |
186 |
aagagcatccacatctttcacaaagtctagagaaaaatctgtattatcaaattgaaggtctgatgtccat |
255 |
Q |
| |
|
|| |||||||||| | ||| | ||||||||| ||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
712214 |
aaaagcatccacaaccttcttagagtctagagcaaaatctacattatcaaattgaaggtatgatgtccat |
712145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 254
Target Start/End: Complemental strand, 717577 - 717356
Alignment:
| Q |
34 |
attatgtgggactatctgagctaactcatgagcaacctcattagcctgactt-tattaaactcaatttgagagttttgaaatctactatgaaataactgt |
132 |
Q |
| |
|
|||||||||| |||| ||||||||||| | || | | ||||||| || || |||||||||||| |||||||||||||||||||| || ||||| ||| |
|
|
| T |
717577 |
attatgtggggctatatgagctaactcgtaagtgatcccattagcttgtctcctattaaactcaacatgagagttttgaaatctactttggaataattgt |
717478 |
T |
|
| Q |
133 |
ctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttctaagagcatccacatctttcacaaagtctagagaaaaatctgtattat |
232 |
Q |
| |
|
||||| || ||||||| |||| |||||||| | ||||| || | | |||||| |||||| ||| | ||| | ||||||||| |||||| ||||| |
|
|
| T |
717477 |
ctacattcaactataatacatccaaattcactactatctcctacacatcttctaaaagcatcaacaaccttcttagagtctagagctaaatctacattat |
717378 |
T |
|
| Q |
233 |
caaattgaaggtctgatgtcca |
254 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
717377 |
caaattgaaggtgtgatgtcca |
717356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 254
Target Start/End: Complemental strand, 14541248 - 14541080
Alignment:
| Q |
86 |
tattaaactcaatttgagagttttgaaatctactatgaaataactgtctacaagcatctataatgcatctaaattcaccattatcttatatgcttgttct |
185 |
Q |
| |
|
||||||||||||| ||||||||| ||| |||| ||||| | ||||||||| |||||||||| |||||||||| || |||||||| || |||||| |
|
|
| T |
14541248 |
tattaaactcaatacgagagtttttaaaattactttgaaacacttgtctacaaacatctataatacatctaaatttactattatcttctacatatgttct |
14541149 |
T |
|
| Q |
186 |
aagagcatccacatctttcacaaagtctagagaaaaatctgtattatcaaattgaaggtctgatgtcca |
254 |
Q |
| |
|
|| |||||||||| ||| | ||||||||||||||| | ||||||||||||||||| ||||||||| |
|
|
| T |
14541148 |
aaaagcatccacaatcttctaagagtctagagaaaaatatacattatcaaattgaaggtatgatgtcca |
14541080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 2087537 - 2087573
Alignment:
| Q |
219 |
aaaatctgtattatcaaattgaaggtctgatgtccat |
255 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
2087537 |
aaaatctattttatcaaattgaaggtctgatgtccat |
2087573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University