View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9884_low_34 (Length: 264)
Name: NF9884_low_34
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_low_34 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 17475819 - 17476082
Alignment:
| Q |
1 |
gagggtcaatagtcgagggagttgagctagcacagcattgtgaagctgccttcacccctgcccttgtgtttggcctagacatgcgttacaggctcaactg |
100 |
Q |
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| T |
17475819 |
gagggtcaatagtcgagggagttgagctagcacagcattgtgaagctgccttcacccctgcccttgtgtttggcctagacatgcgttacaggctcaactg |
17475918 |
T |
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| Q |
101 |
tttgttttggggcgtgggtgtgatagtcgtgcggtacatatatatcttgtaacactgtaaacagcaattcactcaagtaatatacggaactacaactgcg |
200 |
Q |
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| T |
17475919 |
tttgttttggggcgtgggtgtgatagttgtgtggtacatatatatcttgtaacactgtaaaccgcaattcactcaagtaatatacggaactacaactgcg |
17476018 |
T |
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| Q |
201 |
cagtaatcatagaggtcagcacatttggcctatgtttggaaaactacaaaatcatggcagcacc |
264 |
Q |
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| T |
17476019 |
cagtaatcatagaggtcagcacatttggcctatgtttggaaaactacaaaatcatggcagcacc |
17476082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 5948988 - 5948948
Alignment:
| Q |
146 |
cttgtaacactgtaaacagcaattcactcaagtaatatacg |
186 |
Q |
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| T |
5948988 |
cttgtaacactgtaaacactaattcactcaagtaatatacg |
5948948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 38970092 - 38970140
Alignment:
| Q |
146 |
cttgtaacactgtaaacagcaattcactcaagtaatatacggaactaca |
194 |
Q |
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| T |
38970092 |
cttgtaacactgtaaaccctaattcactcaagtaatatatggaactaca |
38970140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 28820750 - 28820795
Alignment:
| Q |
147 |
ttgtaacactgtaaacagcaattcactcaagtaatatacggaacta |
192 |
Q |
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| T |
28820750 |
ttgtaacactgtaaactctaattcactcaagtaatatatggaacta |
28820795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 32155541 - 32155574
Alignment:
| Q |
166 |
aattcactcaagtaatatacggaactacaactgc |
199 |
Q |
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| T |
32155541 |
aattcactcaagtaatatacggaactataactgc |
32155574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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