View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9884_low_39 (Length: 251)

Name: NF9884_low_39
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9884_low_39
NF9884_low_39
[»] chr4 (3 HSPs)
chr4 (19-238)||(54778485-54778702)
chr4 (19-238)||(54790443-54790660)
chr4 (19-230)||(52283105-52283314)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 54778702 - 54778485
Alignment:
Q  19 acaaattcctccgcaatttaaaatttgttgtttagaatcacaccattccagaaatcaaactgtcgatcacaagttctgttttctttttcaaccaacttta 118  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54778702 acaaattcctccgcaatttaaaatttgttgtttagaatcac--cattccagaaatcaaactgtcgatcacaagttctgttttctttttcaaccaacttta 54778605  T
Q  119 tttattttcacctattcatattctgtgaaagtgaccttttttagggtatgtggattggtgttatagatgggaatgtgatatctattttttaaaaattaac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54778604 tttattttcacctattcatattctgtgaaagtgaccttttttagggtatgtggattggtgttatagatgggaatgtgatatctattttttaaaaattaac 54778505  T
Q  219 tagcatattccatccaccct 238  Q
    ||||||||||||||||||||    
T  54778504 tagcatattccatccaccct 54778485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 54790443 - 54790660
Alignment:
Q  19 acaaattcctccgcaatttaaaatttgttgtttagaatcacaccattccagaaatcaaactgtcgatcacaagttctgttttctttttcaaccaacttta 118  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  54790443 acaaattcctccgcaatttaaaatttgttgtttagaatcac--cattccagaaatcaaactgtcgatcacaagttctgttttccttttcaaccaacttta 54790540  T
Q  119 tttattttcacctattcatattctgtgaaagtgaccttttttagggtatgtggattggtgttatagatgggaatgtgatatctattttttaaaaattaac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54790541 tttattttcacctattcatattctgtgaaagtgaccttttttagggtatgtggattggtgttatagatgggaatgtgatatctattttttaaaaattaac 54790640  T
Q  219 tagcatattccatccaccct 238  Q
    ||||||||||||||||||||    
T  54790641 tagcatattccatccaccct 54790660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 52283105 - 52283314
Alignment:
Q  19 acaaattcctccgcaatttaaaatttgttgtttagaatcacaccattccagaaatcaaactgtcgatcacaagttctgttttctttttcaaccaacttta 118  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||| || ||||| |||| || ||||||||||||||||||||||||||||||||    
T  52283105 acaaattcctccgcaatttaaaatttgttgtttagaatcac--cattccaaaagtcaaattgtcaatgacaagttctgttttctttttcaaccaacttta 52283202  T
Q  119 tttattttcacctattcatattctgtgaaagtgaccttttttagggtatgtggattggtgttatagatgggaatgtgatatctattttttaaaaattaac 218  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||| ||||||| |||||| |||||||||    
T  52283203 tttattttaacctattcatattctgtgaaagtgtccttttttagggtatgtggattggtgttatagaatggaatgggatatctctttttttaaaattaac 52283302  T
Q  219 tagcatattcca 230  Q
      ||||||||||    
T  52283303 ctgcatattcca 52283314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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