View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9884_low_4 (Length: 491)
Name: NF9884_low_4
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 44 - 481
Target Start/End: Original strand, 27338855 - 27339292
Alignment:
| Q |
44 |
gaagaaagtacacctacaaacacattaataaaaagatgataaatttgtacattttcgaaatggaaatgaataaagatgaaaagggttgataaataagcaa |
143 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
27338855 |
gaagaaagtacaactacaaacacattaataaaaagatgataaatttgtacattttcgaaatggaaatgaataaaaatgaaaagggtagataaataagcaa |
27338954 |
T |
|
| Q |
144 |
tgaatgaatgagaaagtggtgttacttgagaagaagatgaagtttttcctctctttgcaaaccccaacaagatttggcgaagaaagttgagtttgggaat |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27338955 |
tgaatgaatgagaaagtggtgttacttgagaagaagatgaagtttttcctctctttgcaaaccccaacaagatttggcgaagaaagttgaggttgggaat |
27339054 |
T |
|
| Q |
244 |
gggaatggaagcgatgataataggcaatgtagcagcgatccaagacaacctcagcaatgaaacaagaagtgtcttcattatttgatgttgatcattcgac |
343 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27339055 |
gggaatggaaacgatgataataggcaatgtagcagcgatccaagacaacctcagcaatgaaacaagaagtgtcttcattatttgatgttgatcattcgac |
27339154 |
T |
|
| Q |
344 |
aaaaaagacaagttcatagtaatatgtgaggatatgatacgaggagtggtacttgggagagtgaatgaagaggttaagaatctgatttcattctcatcag |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27339155 |
aaaaaagacaagttcatagtaatatgtgaggatatgatacgaggagtggtacttgggagagtgaatgaagaggttaagaatctgatttcattctcatcag |
27339254 |
T |
|
| Q |
444 |
aaagagacgtgtggtgtgatggatgtggatcctctctg |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27339255 |
aaagagacgtgtggtgtgatggatgtggatcctctctg |
27339292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University