View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9884_low_42 (Length: 250)
Name: NF9884_low_42
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_low_42 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 31410499 - 31410261
Alignment:
| Q |
1 |
cttatgtgtaagtcccacattgaagagggacgagaatgaatgtaatatcccttccatcttttggagaaaatttgcaagctcatatcttcatcttctttca |
100 |
Q |
| |
|
||||||||| | |||||||||| ||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31410499 |
cttatgtgtgactcccacattggagagggacgagaatgaacgtaatatcccttccatcttctgtagaaaatttgcaagctcataacttcatcttctttca |
31410400 |
T |
|
| Q |
101 |
taccctccctc--aaaacattccaagagacaaagataatgtctctaaacaacactttcaagatcaacctatacatgcatgggttaaaggcaaacaacgat |
198 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31410399 |
taccctccctctcaaaacattccaagagacaaaaataatgtctctaaacaacactttcaagatcaacctatacatgcatgggttaaaggcaaacaacgat |
31410300 |
T |
|
| Q |
199 |
gcaagttcaaagcttgatgggagttggggtttaggatct |
237 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31410299 |
gcgagttcgaagcttgatgggagttggggtttaggatct |
31410261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 52189327 - 52189443
Alignment:
| Q |
19 |
attgaagagggacgagaatgaatgtaatatcccttccatcttttggagaaaatttgcaagctcatatcttcatcttctttcataccctcc--ctcaaaac |
116 |
Q |
| |
|
|||| |||||||| ||||||||||||| || |||||||| || | |||||| |||| |||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
52189327 |
attggagagggacctgaatgaatgtaat---ccctccatcttctgaaaaaaattaacaagttcatatcttcatcttccttcataccctccatctcaaaac |
52189423 |
T |
|
| Q |
117 |
attccaagagacaaagataa |
136 |
Q |
| |
|
||||||| ||||||| |||| |
|
|
| T |
52189424 |
attccaaaagacaaaaataa |
52189443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 19810641 - 19810518
Alignment:
| Q |
16 |
cacattgaagagggacgagaatgaatgtaatatcccttccatcttttgg-agaaaatttgcaagctcatatcttcatcttctttcataccctcc--ctca |
112 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||| ||| | |||||| |||| |||||||||||||||| |||||||||||| |||| |
|
|
| T |
19810641 |
cacattggagagggataagaatgaatgtaatatcccttccatcttctggaaaaaaattaacaagttcatatcttcatcttccttcataccctccctctca |
19810542 |
T |
|
| Q |
113 |
aaacattccaagagacaaagataa |
136 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
19810541 |
aaacattccaagagacaaaaataa |
19810518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 41740936 - 41740829
Alignment:
| Q |
19 |
attgaagagggacgagaatgaatgtaatatcccttccatcttttggagaaaatttgcaagctcatatcttcatcttctttcataccctcc--ctcaaaac |
116 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| || || || |||| |||||| |||| |||||| ||||||||| |||||||||||| |||||||| |
|
|
| T |
41740936 |
attgaagagggatgtgaatgaatgtaatatccc-tcaattttctggaaaaaattaacaagttcatatattcatcttccttcataccctccatctcaaaac |
41740838 |
T |
|
| Q |
117 |
attccaaga |
125 |
Q |
| |
|
||||||||| |
|
|
| T |
41740837 |
attccaaga |
41740829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 35062714 - 35062834
Alignment:
| Q |
18 |
cattgaagagggacgagaatgaatgtaatatcccttccatcttttggagaaaatttgcaagctcatatcttcatcttctttcataccctcc--ctcaaaa |
115 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||| || || || |||| |||||| |||| |||||| ||||||||| | ||||||||| ||||||| |
|
|
| T |
35062714 |
cattggagagggacgtgaatgaatgtaatatccc-tcaattttctggaaaaaattaacaagttcatatattcatcttcctcaataccctccatctcaaaa |
35062812 |
T |
|
| Q |
116 |
cattccaagagacaaagataat |
137 |
Q |
| |
|
|||||||| ||||||| ||||| |
|
|
| T |
35062813 |
cattccaaaagacaaaaataat |
35062834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 26281004 - 26280888
Alignment:
| Q |
24 |
agagggacgagaatgaatgtaatatcccttccatcttttggagaaaatttgcaagctcatatcttcatcttctttcataccct---ccctcaaaacattc |
120 |
Q |
| |
|
|||||||| | |||||||||||||||||||||| ||| | |||||| ||||||||||||||||| ||| | |||||||| ||||||||||||| |
|
|
| T |
26281004 |
agagggaccataatgaatgtaatatcccttccaccttcattaaaaaattaacaagctcatatcttcatattcctccataccctcccccctcaaaacatt- |
26280906 |
T |
|
| Q |
121 |
caagagacaaagataatg |
138 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
26280905 |
caagagacaaaaataatg |
26280888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 142
Target Start/End: Original strand, 35967514 - 35967623
Alignment:
| Q |
34 |
gaatgaatgtaatatcccttccatcttttggagaaaatttgcaagctcatatcttcatcttctttcataccctcc--ctcaaaacattccaagagacaaa |
131 |
Q |
| |
|
||||||||||||||||||| | || || ||| |||||| |||| |||||| ||||||||| |||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
35967514 |
gaatgaatgtaatatccct-caattttcgggaaaaaattaacaagttcatatattcatcttcattcataccctccatctcaaaacattccaaaagacaaa |
35967612 |
T |
|
| Q |
132 |
gataatgtctc |
142 |
Q |
| |
|
||||| |||| |
|
|
| T |
35967613 |
aataatctctc |
35967623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 17863606 - 17863722
Alignment:
| Q |
19 |
attgaagagggacgagaatgaatgtaatatcccttccatcttttggagaaaatttgcaagctcatatcttcatcttctttcataccctcc--ctcaaaac |
116 |
Q |
| |
|
|||| |||||||| ||||||||||||| || |||||||| | || |||||| |||| |||||| || |||||| |||||||||||| |||||||| |
|
|
| T |
17863606 |
attggagagggacctgaatgaatgtaat---ccctccatcttctagaaaaaattaacaagttcatatttttatcttccttcataccctccatctcaaaac |
17863702 |
T |
|
| Q |
117 |
attccaagagacaaagataa |
136 |
Q |
| |
|
||||||| ||||||| |||| |
|
|
| T |
17863703 |
attccaaaagacaaaaataa |
17863722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University