View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9884_low_45 (Length: 245)
Name: NF9884_low_45
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 17476318 - 17476545
Alignment:
| Q |
1 |
ttttaaattgtccgttttccttaaatcatttccgtacgaaaataatgtgggaaataaatgaagtacaagtttcttttaaacaaagcaatttgttgataag |
100 |
Q |
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| T |
17476318 |
ttttaaattgtccattttccttaa-tcatttccgtacgaaaataatgtgggaaataaatgaagtacaagtttcttttaaacaaagcaatttgttgataag |
17476416 |
T |
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| Q |
101 |
gattgaccaatgtttatgcacaaattgtgcatattgattaaaataaatgtttaaacaattcaacagtaatcaattgcagaaaatccagcaacctaatagt |
200 |
Q |
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| T |
17476417 |
gattgaccaatgtttatgcacaaattgtgcatattgattaaaataaatgtttaaacaattcaacagtaatcaattgcagaaaatccagcaacctaatagt |
17476516 |
T |
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| Q |
201 |
atactaagagccgaaaattgtgaaaatca |
229 |
Q |
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| T |
17476517 |
atactaagagacgaaaattgtgaaaatca |
17476545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 17464947 - 17465020
Alignment:
| Q |
53 |
aataaatgaagtacaagtttcttttaaacaaagcaatttgttgataaggattgaccaatgtttatgcacaaatt |
126 |
Q |
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| T |
17464947 |
aatagatgaagtgcaagttgcttttaaacaaagcaattcgttgataaggatcgaccaatgttcaagcacaaatt |
17465020 |
T |
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