View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9884_low_46 (Length: 242)
Name: NF9884_low_46
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 32907968 - 32907765
Alignment:
| Q |
18 |
agagacagcagctcggaccattaatattattgagccaactctaaagataatgcggctcaatttgtaagtttaaatctcttcccagctacggtgagagttt |
117 |
Q |
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| T |
32907968 |
agagacagcagctcggaccattaatatt---gagccaactctaaagataatgcggctcaatttgtaagttttaatctcttcccagctacggtgagagttt |
32907872 |
T |
|
| Q |
118 |
tgttaatttcaatccagtgacatatataaaaagagcgacacaatagagcagttaagtcaatagttgaaggccaacagattcaatcaagagaaaagaaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32907871 |
tgttaatttcaatccagtgacatatataaaaagagcgacacaatagagcagttaagtcaatagttgaaggccaacagattcaatcaagagaaaagaaaat |
32907772 |
T |
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| Q |
218 |
tagcagt |
224 |
Q |
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||||||| |
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| T |
32907771 |
tagcagt |
32907765 |
T |
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