View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9884_low_50 (Length: 240)
Name: NF9884_low_50
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6508863 - 6508641
Alignment:
| Q |
1 |
tacaaaacataacacagtcatgcatgcacgtttaaattatatgaatttttcagtcatctttaatttgatcatatgtatatattttatgtagattgaagct |
100 |
Q |
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| T |
6508863 |
tacaaaacataacacagtcatgcatgcacgtttaaattatatgaatttttcagtcatctttaatttgattatatgtatatattttatgtagattgaagct |
6508764 |
T |
|
| Q |
101 |
gagccagcattagatgtactactctcagatatttgcatagctacatcggctgctccaacttatttaccagctcactatttcgnnnnnnnngatgaacatg |
200 |
Q |
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| T |
6508763 |
gagccagcattagatgtactactctcagatatttgcatagctacatcggctgctccaacttatttaccagctcactatttcgaaaaaaaagatgaacatg |
6508664 |
T |
|
| Q |
201 |
ggaatgtcatcaaagaatacaat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
6508663 |
ggaatgtcatcaaagaatacaat |
6508641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 223
Target Start/End: Complemental strand, 6503328 - 6503147
Alignment:
| Q |
40 |
tatgaatttttcagtcatctttaa-tttgatcatatgtatatattttatgtagattgaagctgagccagcattagatgtactactctcagatatttgcat |
138 |
Q |
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||||||| ||||| ||| ||| || ||||||||||| ||||| ||||| ||||||| ||||||||| | |||||||||| ||| ||||||||||||| |
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| T |
6503328 |
tatgaatatttcaatcaccttgaactttgatcatatatatat---ttatgcagattgatgctgagccaactttagatgtaccactagcagatatttgcat |
6503232 |
T |
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| Q |
139 |
agctacatcggctgctccaacttatttaccagctcactatttcgnnnnnnnngatgaacatgggaatgtcatcaaagaatacaat |
223 |
Q |
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| T |
6503231 |
cgctacatcggctgcaccaacttatttgcccgctcactatttcgcgaaaaaagatgaaaatgggaaagtcatcaaggaatacaat |
6503147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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