View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9884_low_54 (Length: 232)
Name: NF9884_low_54
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 45793499 - 45793720
Alignment:
| Q |
1 |
tcttttatatgtctgatgagtgaaattttccatcgtgggcagtacggagcgacatgtttgacatggcttggcacatcatgtgtagctactggatctaatg |
100 |
Q |
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| T |
45793499 |
tcttttatatgtctgatgagtgaaaatttccatcgtgggcagtacggagcgacatgtttgacatggcttggcacatcatgtgtagctactggatctaatg |
45793598 |
T |
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| Q |
101 |
atggagttgtgagattatgggatagtcggtctggtgaatgtgtaagaacattcagttcagagggcactctgaacccattcaatctctttctttgtctgca |
200 |
Q |
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| T |
45793599 |
atggagttgtgagattatgggatagtcgatctggtgaatgtgtaagaaca-----ttcagagggcactctgaacccattcaatctctttctttgtctgca |
45793693 |
T |
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| Q |
201 |
aatcgtaattacattgtctctgcttct |
227 |
Q |
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| T |
45793694 |
aatcgtgattacattgtctcggcttct |
45793720 |
T |
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Back To:
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Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 39 - 204
Target Start/End: Complemental strand, 43816991 - 43816831
Alignment:
| Q |
39 |
gcagtacggagcgacatgtttgacatggcttggcacatcatgtgtagctactggatctaatgatggagttgtgagattatgggatagtcggtctggtgaa |
138 |
Q |
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|||||| |||| |||||||| || |||||||||||||| | ||| |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||| |
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| T |
43816991 |
gcagtatggagtgacatgttcaacctggcttggcacatcgtatgtggctactggatctaatgatggagctgtgagattatgggacagtcgatctggtgaa |
43816892 |
T |
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| Q |
139 |
tgtgtaagaacattcagttcagagggcactctgaacccattcaatctctttctttgtctgcaaatc |
204 |
Q |
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| T |
43816891 |
tgtgtcagaaca-----tttagagggcactctgaaagcattcaatctctttctttgtctgctaatc |
43816831 |
T |
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