View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9884_low_56 (Length: 227)

Name: NF9884_low_56
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9884_low_56
NF9884_low_56
[»] chr6 (4 HSPs)
chr6 (144-211)||(5130059-5130126)
chr6 (144-211)||(26619461-26619528)
chr6 (144-211)||(26725374-26725441)
chr6 (16-57)||(5129403-5129445)
[»] chr4 (4 HSPs)
chr4 (144-211)||(1507090-1507157)
chr4 (152-211)||(5576682-5576741)
chr4 (16-57)||(4222244-4222286)
chr4 (16-57)||(13714638-13714680)
[»] chr3 (2 HSPs)
chr3 (155-212)||(14529763-14529820)
chr3 (145-211)||(2745996-2746063)
[»] scaffold0043 (1 HSPs)
scaffold0043 (144-211)||(68950-69018)


Alignment Details
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 5130059 - 5130126
Alignment:
Q  144 ttaaaggtgattgtacttgaaccttatgaaaaatgggtaaaaatttgtatggcatattggtagtatat 211  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  5130059 ttaaaggtgattgtacttgaaccttatgaaaattgggtaaaattttgtatggcatattggtagtatat 5130126  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 26619461 - 26619528
Alignment:
Q  144 ttaaaggtgattgtacttgaaccttatgaaaaatgggtaaaaatttgtatggcatattggtagtatat 211  Q
    |||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||    
T  26619461 ttaatggtgattgtacttgaacattatgaaaattgggtaaaaatttgtatggcatattggtattatat 26619528  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 26725374 - 26725441
Alignment:
Q  144 ttaaaggtgattgtacttgaaccttatgaaaaatgggtaaaaatttgtatggcatattggtagtatat 211  Q
    |||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||    
T  26725374 ttaatggtgattgtacttgaacattatgaaaattgggtaaaaatttgtatggcatattggtattatat 26725441  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 5129403 - 5129445
Alignment:
Q  16 gggcatttcttacctaaggatataaataaga-aaaacatgaaa 57  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  5129403 gggcatttcttacctaaagatataaataagacaaaacatgaaa 5129445  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 1507157 - 1507090
Alignment:
Q  144 ttaaaggtgattgtacttgaaccttatgaaaaatgggtaaaaatttgtatggcatattggtagtatat 211  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1507157 ttaaaggtgattgtactagaaccttatgaaaattgggtaaaaatttgtatggcatattggtagtatat 1507090  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 5576682 - 5576741
Alignment:
Q  152 gattgtacttgaaccttatgaaaaatgggtaaaaatttgtatggcatattggtagtatat 211  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  5576682 gattgtacttcaaccttatgaaaattgggtaaaaatttgtatggcatgttggtagtatat 5576741  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 4222286 - 4222244
Alignment:
Q  16 gggcatttcttacctaaggatataaataaga-aaaacatgaaa 57  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  4222286 gggcatttcttacctaaggatataaataagacaaaacatgaaa 4222244  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 13714680 - 13714638
Alignment:
Q  16 gggcatttcttacctaaggatataaataaga-aaaacatgaaa 57  Q
    |||| |||||||||||||||||||||||||| |||||||||||    
T  13714680 gggcttttcttacctaaggatataaataagacaaaacatgaaa 13714638  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 14529763 - 14529820
Alignment:
Q  155 tgtacttgaaccttatgaaaaatgggtaaaaatttgtatggcatattggtagtatatg 212  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||    
T  14529763 tgtacttgaaccttatgaaaattgggtaaaaattcgtatggcatgttggtagtatatg 14529820  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 2745996 - 2746063
Alignment:
Q  145 taaaggtgattgtacttgaaccttatgaaaaatgggtaaaaa-tttgtatggcatattggtagtatat 211  Q
    |||| |||||||||||||||||||||||||| |||||||||| || |||||||||||| |||||||||    
T  2745996 taaaagtgattgtacttgaaccttatgaaaattgggtaaaaacttcgtatggcatatttgtagtatat 2746063  T

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Target: scaffold0043 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 68950 - 69018
Alignment:
Q  144 ttaaaggtgattgtacttgaaccttatgaaaaatgggtaaaaa-tttgtatggcatattggtagtatat 211  Q
    ||||| |||| ||||||||||||||||||||| |||||||||| || |||||||||||| |||||||||    
T  68950 ttaaaagtgactgtacttgaaccttatgaaaattgggtaaaaacttcgtatggcatatttgtagtatat 69018  T

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