View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9884_low_58 (Length: 223)
Name: NF9884_low_58
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 509256 - 509342
Alignment:
| Q |
41 |
tggcagcaacaatattattaggaacttacgtgcagggacaagagaaaatcaaataagcagcaagttaaatgaattggaatgtaacaa |
127 |
Q |
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| T |
509256 |
tggcagcaccaatattattaggaacttacgtgcaggaataagagaaatttaaataagcagcaagttaaatgaattggaatgtaacaa |
509342 |
T |
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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 4126784 - 4126870
Alignment:
| Q |
41 |
tggcagcaacaatattattaggaacttacgtgcagggacaagagaaaatcaaataagcagcaagttaaatgaattggaatgtaacaa |
127 |
Q |
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| T |
4126784 |
tggcagcaaaaatattgttaggaacttacgtgcagcaacaagagaaatttaaataagcagcaagttaaatgaattggaatgtaacaa |
4126870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 27002227 - 27002313
Alignment:
| Q |
41 |
tggcagcaacaatattattaggaacttacgtgcagggacaagagaaaatcaaataagcagcaagttaaatgaattggaatgtaacaa |
127 |
Q |
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| T |
27002227 |
tggcagcagcaatattatcaggaacttacgtgcaggaacaagagaaaattaaatacgcagcaagttaaatgaattggaatgtaacaa |
27002313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 44005817 - 44005766
Alignment:
| Q |
41 |
tggcagcaacaatattattaggaacttacgtgcagggacaagagaaaatcaa |
92 |
Q |
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| T |
44005817 |
tggcagcagcaatattattaggaacttacgtgcagggacaagagaaaatcaa |
44005766 |
T |
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