View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9884_low_6 (Length: 462)
Name: NF9884_low_6
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9884_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 8e-96; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 253 - 444
Target Start/End: Complemental strand, 44816321 - 44816133
Alignment:
| Q |
253 |
ttaagaagagaattagctttagctggcttattataatggataattttcaaaaccagtacggtgctgttcctataagcaacaatgatctaattcataggga |
352 |
Q |
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| T |
44816321 |
ttaagaagagaattagctttagctggcttattataatggataattttcaaaaccagtacggtgctgttcctataagcaacaatgatctaattcataggga |
44816222 |
T |
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| Q |
353 |
acttgatactaccggcgttaatgttgatggtggcggaagcacacaagccatggcagatacaaccaccgcagttgacactaccaccacagacg |
444 |
Q |
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| T |
44816221 |
acttgatactaccggcgt---tgttgatggtggcggaagcacacaagccatggcagatacaaccaccgcagttgacactaccaccacagacg |
44816133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 75 - 216
Target Start/End: Complemental strand, 44816554 - 44816413
Alignment:
| Q |
75 |
tctttaaaaaatggtgtcatggtcgccgccctcgaggtatggtatttgcacgtggcaatctctagtgaaacttgtcaccgtttggtagcaattacaatga |
174 |
Q |
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| T |
44816554 |
tctttaaaaaatggtgtcatggtcgccgccctcgaggtatggtattcgcacgtggcaatctctagtgaaacttgtcaccgtttggtagcaattacaatga |
44816455 |
T |
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| Q |
175 |
caaggcagttaacaaataatgttttcgaatatgaatatatat |
216 |
Q |
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| T |
44816454 |
caaggcagttaacaaataatgttttcgaatatgaatatatat |
44816413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 44816713 - 44816650
Alignment:
| Q |
17 |
aaatgagtaaagttttctcattgcattttttac-aaaagagtcattcataaatcaaacttcttta |
80 |
Q |
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| T |
44816713 |
aaatgagtaaagttttctcattgcattttttacaaaaagagtcattcat-aatcaaacttcttta |
44816650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 237
Target Start/End: Complemental strand, 44816412 - 44816384
Alignment:
| Q |
209 |
atatatatgtgatgtgattgcactcacaa |
237 |
Q |
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| T |
44816412 |
atatatatgtgatgtgattgcactcacaa |
44816384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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