View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9884_low_61 (Length: 204)

Name: NF9884_low_61
Description: NF9884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9884_low_61
NF9884_low_61
[»] scaffold0691 (1 HSPs)
scaffold0691 (11-178)||(6477-6644)
[»] chr3 (13 HSPs)
chr3 (11-182)||(2748644-2748815)
chr3 (11-100)||(2768715-2768804)
chr3 (11-100)||(2839003-2839092)
chr3 (20-112)||(2797016-2797108)
chr3 (11-182)||(2856131-2856302)
chr3 (11-112)||(2790004-2790105)
chr3 (20-100)||(2755699-2755779)
chr3 (21-100)||(2818213-2818292)
chr3 (11-108)||(2758860-2758957)
chr3 (21-182)||(5412563-5412724)
chr3 (11-112)||(2806907-2807008)
chr3 (37-93)||(3200625-3200681)
chr3 (37-93)||(3357767-3357823)


Alignment Details
Target: scaffold0691 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 11 - 178
Target Start/End: Complemental strand, 6644 - 6477
Alignment:
Q  11 gaagcagagaccaacgatggtataagaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaataccttaggctgatgc 110  Q
    |||||||| || || ||||| ||||||||||||||||||||  ||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| |    
T  6644 gaagcagacactaatgatggaataagaacttgggtgaagcatatgagggaagcatcatttcgcattgaagatgttattgatgaataccttcggctgatcc 6545  T
Q  111 atggagtcaaacatccaggatgtggggcattagcctacaagattgcaagcccaattaaaactttgatt 178  Q
    || | | ||| | ||| ||||| ||  |||||| || |||||||| ||||| ||| ||||||||||||    
T  6544 atagggccaaccctcctggatgcggatcattagtctgcaagattgtaagcctaatcaaaactttgatt 6477  T

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Target: chr3 (Bit Score: 68; Significance: 1e-30; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 2748644 - 2748815
Alignment:
Q  11 gaagcagagaccaacgatggtataagaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaataccttaggctgatgc 110  Q
    |||||||| || |||||||| ||||||||||||||||||||  |||| |||||||| ||||||||||||||||||||||||||||||||| |||| ||||    
T  2748644 gaagcagacactaacgatggaataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggctaatgc 2748743  T
Q  111 atggagtcaaacatccaggatgtggggcattagcctacaagattgcaagcccaattaaaactttgattcccc 182  Q
    || | | ||| | |||  |||| ||  | |||| |  |||||||||||| | ||| ||||||||||||||||    
T  2748744 atagggccaatcctcctagatgcggatctttagtcggcaagattgcaaggcaaatcaaaactttgattcccc 2748815  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 2768715 - 2768804
Alignment:
Q  11 gaagcagagaccaacgatggtataagaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaatacctt 100  Q
    |||||||| ||||||||||| ||||||||||||||||||||  |||| |||||||| |||||||||||||||||||||||||||||||||    
T  2768715 gaagcagacaccaacgatggaataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaatacctt 2768804  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 2839092 - 2839003
Alignment:
Q  11 gaagcagagaccaacgatggtataagaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaatacctt 100  Q
    |||||||| | ||||||||| ||||||||||||||||||||  |||| |||||||| |||||||||||||||||||||||||||||||||    
T  2839092 gaagcagacatcaacgatggaataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaatacctt 2839003  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 2797016 - 2797108
Alignment:
Q  20 accaacgatggtataagaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaataccttaggctgatgcat 112  Q
    ||||| ||||| ||||||||||||||||||||  |||| |||||||| |||||||||||||||||||||||||||||||||  ||||||||||    
T  2797016 accaatgatggaataagaacttgggtgaagcatctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcagctgatgcat 2797108  T

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Target: chr3; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 11 - 182
Target Start/End: Complemental strand, 2856302 - 2856131
Alignment:
Q  11 gaagcagagaccaacgatggtataagaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaataccttaggctgatgc 110  Q
    |||||||| | ||| ||||| ||||||||||||||||||||  |||| |||||||| ||||||||||||||||||||||||||||||||| || |||| |    
T  2856302 gaagcagacatcaatgatggaataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgatac 2856203  T
Q  111 atggagtcaaacatccaggatgtggggcattagcctacaagattgcaagcccaattaaaactttgattcccc 182  Q
    || | | ||| | ||  ||| ||||  | |||| | ||||| || |||||| ||| ||||||||||||||||    
T  2856202 atagggccaatcctcatggacgtggatctttagtcaacaaggttacaagccgaatcaaaactttgattcccc 2856131  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 2790004 - 2790105
Alignment:
Q  11 gaagcagagaccaacgatggtataagaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaataccttaggctgatgc 110  Q
    |||||||| ||||| ||||| ||||||||||||||||||||  |||| |||||||| ||||||||||||||| |||| |||||||||||| |||| ||||    
T  2790004 gaagcagacaccaatgatggaataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatatcatcgatgaataccttcggctcatgc 2790103  T
Q  111 at 112  Q
    ||    
T  2790104 at 2790105  T

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Target: chr3; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 2755699 - 2755779
Alignment:
Q  20 accaacgatggtataagaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaatacctt 100  Q
    ||||| ||||| ||||||||||||||||||||  |||| |||||||| |||||||||||||||||||||||||||||||||    
T  2755699 accaatgatggaataagaacttgggtgaagcatatgagagaagcatcatttcgcattgaagatgtcattgatgaatacctt 2755779  T

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Target: chr3; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 2818213 - 2818292
Alignment:
Q  21 ccaacgatggtataagaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaatacctt 100  Q
    |||| ||||| |||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||    
T  2818213 ccaatgatggaataagaacatgggtgaagcaagtgagagatgcatcatttcgcattgaagatgtcattgatgaatacctt 2818292  T

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Target: chr3; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 2758860 - 2758957
Alignment:
Q  11 gaagcagagaccaacgatggtataagaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaataccttaggctgat 108  Q
    |||||||| ||||| || || |||||||| |||||||||||  |||| |||||||||||||||||||||||| | ||||| ||||||||| |||||||    
T  2758860 gaagcagaaaccaatgaaggaataagaacatgggtgaagcatatgagagaagcatcgtttcgcattgaagatataattgacgaataccttcggctgat 2758957  T

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Target: chr3; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 5412563 - 5412724
Alignment:
Q  21 ccaacgatggtataagaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaataccttaggctgatgcatggagtcaa 120  Q
    |||| ||||| |||||||| |||||||||||  |||| |||||||| ||||||||||||||||||||||| ||||||| | |||| |||||| | |||||    
T  5412563 ccaatgatggaataagaacatgggtgaagcatatgagagaagcatcatttcgcattgaagatgtcattgacgaataccatcggctaatgcatagggtcaa 5412662  T
Q  121 acatccaggatgtggggcattagcctacaagattgcaagcccaattaaaactttgattcccc 182  Q
     | ||  |||||  |  | |||| || |||||||||||||   || ||||||||||||||||    
T  5412663 tcctcttggatgcagatctttagtctgcaagattgcaagcttgatcaaaactttgattcccc 5412724  T

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Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 2806907 - 2807008
Alignment:
Q  11 gaagcagagaccaacgatggtataagaacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatgaataccttaggctgatgc 110  Q
    |||||||| || || ||||| || ||||||||||| |||||  || | |||||||| ||||||||||||||| |||| |||||||||| | |||||||||    
T  2806907 gaagcagacacaaatgatggaattagaacttgggtaaagcagctgcgcgaagcatcatttcgcattgaagatatcatcgatgaataccatcggctgatgc 2807006  T
Q  111 at 112  Q
    ||    
T  2807007 at 2807008  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 3200625 - 3200681
Alignment:
Q  37 aacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatga 93  Q
    |||||||||||||||  | || |||||||| |||||||| |||||||| ||||||||    
T  3200625 aacttgggtgaagcagctaagagaagcatcttttcgcatagaagatgtgattgatga 3200681  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 3357823 - 3357767
Alignment:
Q  37 aacttgggtgaagcaagtgagggaagcatcgtttcgcattgaagatgtcattgatga 93  Q
    |||||||||||||||  | || |||||||| |||||||| |||||||| ||||||||    
T  3357823 aacttgggtgaagcagctaagagaagcatcttttcgcatagaagatgtgattgatga 3357767  T

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