View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9885_high_4 (Length: 366)

Name: NF9885_high_4
Description: NF9885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9885_high_4
NF9885_high_4
[»] chr8 (12 HSPs)
chr8 (1-349)||(33390554-33390904)
chr8 (137-261)||(29780960-29781088)
chr8 (137-258)||(40891055-40891180)
chr8 (169-258)||(38520096-38520185)
chr8 (169-258)||(38629552-38629641)
chr8 (126-258)||(15882231-15882368)
chr8 (137-199)||(10778699-10778765)
chr8 (169-258)||(17426632-17426721)
chr8 (169-258)||(24741827-24741916)
chr8 (220-258)||(13886538-13886576)
chr8 (269-315)||(33385057-33385103)
chr8 (209-258)||(23940923-23940972)
[»] chr7 (21 HSPs)
chr7 (99-258)||(34052283-34052446)
chr7 (126-261)||(30259067-30259206)
chr7 (99-258)||(20184242-20184406)
chr7 (99-258)||(35339282-35339445)
chr7 (169-258)||(24836098-24836187)
chr7 (126-258)||(3953046-3953182)
chr7 (160-258)||(10398388-10398486)
chr7 (169-258)||(31231618-31231707)
chr7 (137-254)||(30594735-30594856)
chr7 (137-258)||(38883263-38883388)
chr7 (219-258)||(33355301-33355340)
chr7 (209-258)||(34052283-34052332)
chr7 (209-258)||(35665734-35665783)
chr7 (169-242)||(40358193-40358266)
chr7 (137-258)||(10936474-10936599)
chr7 (123-240)||(37093796-37093917)
chr7 (209-258)||(10936588-10936637)
chr7 (99-199)||(29277842-29277945)
chr7 (209-258)||(31231734-31231783)
chr7 (209-258)||(38528530-38528579)
chr7 (210-258)||(33721831-33721879)
[»] chr3 (30 HSPs)
chr3 (169-258)||(50099512-50099601)
chr3 (133-258)||(13078167-13078296)
chr3 (137-258)||(3970495-3970620)
chr3 (137-258)||(45487841-45487966)
chr3 (137-258)||(21969161-21969286)
chr3 (137-258)||(21991597-21991722)
chr3 (126-258)||(12838108-12838244)
chr3 (209-261)||(1476669-1476721)
chr3 (99-258)||(4072277-4072441)
chr3 (137-243)||(25446291-25446402)
chr3 (169-258)||(297541-297630)
chr3 (137-258)||(10117557-10117678)
chr3 (137-258)||(10254610-10254736)
chr3 (209-258)||(10017118-10017167)
chr3 (209-258)||(10117519-10117568)
chr3 (209-258)||(10254572-10254621)
chr3 (169-258)||(36657437-36657526)
chr3 (209-258)||(43150484-43150533)
chr3 (99-243)||(12789610-12789758)
chr3 (160-250)||(37536939-37537029)
chr3 (169-258)||(8831819-8831908)
chr3 (169-258)||(13723992-13724080)
chr3 (209-258)||(21969275-21969324)
chr3 (209-258)||(21991711-21991760)
chr3 (169-258)||(32237398-32237487)
chr3 (169-258)||(35368811-35368900)
chr3 (209-258)||(45487803-45487852)
chr3 (169-258)||(46679339-46679428)
chr3 (126-243)||(25488360-25488481)
chr3 (126-243)||(25561042-25561163)
[»] chr4 (26 HSPs)
chr4 (137-258)||(27434652-27434777)
chr4 (126-258)||(1298943-1299079)
chr4 (169-258)||(24969545-24969634)
chr4 (137-258)||(530673-530798)
chr4 (126-258)||(13204408-13204544)
chr4 (155-258)||(47452814-47452917)
chr4 (169-258)||(4688251-4688340)
chr4 (169-258)||(24915798-24915887)
chr4 (169-258)||(42274496-42274585)
chr4 (137-258)||(55107566-55107691)
chr4 (99-243)||(20435159-20435307)
chr4 (169-258)||(3017306-3017396)
chr4 (209-258)||(4552789-4552838)
chr4 (169-258)||(18417735-18417824)
chr4 (169-258)||(32318724-32318813)
chr4 (158-249)||(56552128-56552218)
chr4 (137-258)||(21048709-21048833)
chr4 (174-256)||(42906861-42906943)
chr4 (209-258)||(530787-530836)
chr4 (169-258)||(4552863-4552952)
chr4 (174-243)||(9355572-9355641)
chr4 (209-258)||(18417661-18417710)
chr4 (169-257)||(24294545-24294636)
chr4 (209-258)||(47465102-47465151)
chr4 (209-258)||(52824243-52824292)
chr4 (209-258)||(55107528-55107577)
[»] chr6 (10 HSPs)
chr6 (99-258)||(15546636-15546799)
chr6 (137-258)||(21379945-21380070)
chr6 (126-258)||(885416-885552)
chr6 (169-258)||(4890484-4890573)
chr6 (133-258)||(14393599-14393731)
chr6 (169-258)||(11687147-11687236)
chr6 (169-258)||(7808687-7808776)
chr6 (209-258)||(21380059-21380108)
chr6 (225-258)||(33533964-33533997)
chr6 (169-253)||(3369063-3369147)
[»] chr2 (15 HSPs)
chr2 (99-258)||(45408629-45408792)
chr2 (137-258)||(24101836-24101961)
chr2 (137-261)||(12850543-12850671)
chr2 (99-258)||(34490460-34490623)
chr2 (133-258)||(7737102-7737232)
chr2 (99-258)||(1923984-1924148)
chr2 (133-258)||(2818704-2818833)
chr2 (99-258)||(22269726-22269889)
chr2 (169-243)||(43476024-43476098)
chr2 (136-258)||(6605776-6605901)
chr2 (137-258)||(3116918-3117043)
chr2 (207-258)||(16705849-16705900)
chr2 (219-258)||(18034536-18034575)
chr2 (209-258)||(16705737-16705786)
chr2 (209-258)||(22346493-22346542)
[»] scaffold0122 (1 HSPs)
scaffold0122 (126-258)||(45865-46001)
[»] chr5 (12 HSPs)
chr5 (172-258)||(20476512-20476598)
chr5 (125-258)||(12744856-12744993)
chr5 (169-258)||(13754295-13754384)
chr5 (169-258)||(15855921-15856010)
chr5 (169-258)||(16473033-16473122)
chr5 (137-243)||(21261985-21262095)
chr5 (169-258)||(35420616-35420705)
chr5 (137-258)||(1138601-1138726)
chr5 (137-258)||(21259734-21259859)
chr5 (126-197)||(37655217-37655291)
chr5 (221-258)||(10499904-10499941)
chr5 (209-258)||(24397364-24397413)
[»] chr1 (28 HSPs)
chr1 (99-258)||(19954915-19955078)
chr1 (169-258)||(48954218-48954307)
chr1 (169-258)||(40647196-40647285)
chr1 (169-258)||(27240928-27241017)
chr1 (160-261)||(36007821-36007922)
chr1 (99-258)||(47940574-47940738)
chr1 (170-258)||(51789601-51789689)
chr1 (127-243)||(27670175-27670295)
chr1 (137-240)||(3607751-3607858)
chr1 (99-258)||(14387019-14387182)
chr1 (137-258)||(19796985-19797110)
chr1 (209-258)||(22339102-22339151)
chr1 (137-258)||(5189511-5189636)
chr1 (126-243)||(42561314-42561435)
chr1 (137-258)||(50627173-50627298)
chr1 (208-258)||(16518302-16518352)
chr1 (169-243)||(26208503-26208577)
chr1 (128-199)||(39015256-39015331)
chr1 (209-258)||(5189473-5189522)
chr1 (209-258)||(9978170-9978219)
chr1 (169-258)||(19204037-19204126)
chr1 (169-258)||(19206447-19206536)
chr1 (209-258)||(19797099-19797148)
chr1 (209-258)||(49285093-49285142)
chr1 (172-261)||(50856322-50856411)
chr1 (169-238)||(51276719-51276788)
chr1 (209-258)||(51276813-51276862)
chr1 (167-199)||(2302479-2302511)
[»] scaffold0188 (1 HSPs)
scaffold0188 (133-243)||(7124-7238)
[»] scaffold0107 (1 HSPs)
scaffold0107 (169-258)||(51141-51230)
[»] scaffold0163 (1 HSPs)
scaffold0163 (209-258)||(2058-2107)
[»] scaffold0069 (1 HSPs)
scaffold0069 (209-258)||(26409-26458)


Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 33390554 - 33390904
Alignment:
Q  1 taaacaaaaattacagctgacaaaattcccacttcaaatgaatagtatattgtatcctttccctgatcaatcttccatgctcctcaaccaaaagaagtaa 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33390554 taaacaaaaattacagctgacaaaattcccacttcaaatggatagtatattgtatcctttccctgatcaatcttccatgctcctcaaccaaaataagtaa 33390653  T
Q  101 aacttgggtacatttctttacctattttttgcatgattcttaactaaaaatacatt--gtggttaaaacgaactttgagaaaattgtgaatttgaggaaa 198  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||    
T  33390654 aacttgggtacatttctttacctgttttttgcatgattcttaactaaaaatacattttgtggttataacgaactttgagaaaattgtgaatttgaggaaa 33390753  T
Q  199 ttgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagttttatcaaagaagtattgcactaaattcaaacataatgttccc 298  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33390754 tcgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagttttatcaaagaagtattgcactaaattcaaacataatgttccc 33390853  T
Q  299 aaggtgctagtgtatttcacttcgctataaggcaaagcaaaaggtctgtgt 349  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||||||    
T  33390854 aaggtgctagtgtatttcatttcgctataaggtgaagcaaaaggtctgtgt 33390904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 137 - 261
Target Start/End: Complemental strand, 29781088 - 29780960
Alignment:
Q  137 ttcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaag 232  Q
    |||||||||||||||||||    | ||| || ||| ||||||||||||||| || ||||||||||||| ||   ||||||| ||||||||||| ||||||    
T  29781088 ttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaattatggtaaatttagttaaaaaccatacgaaaag 29780989  T
Q  233 cacctaaggaaatgcacctaagttttatc 261  Q
    ||||||||||| || |||||| |||||||    
T  29780988 cacctaaggaattgtacctaaattttatc 29780960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 40891055 - 40891180
Alignment:
Q  137 ttcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaag 232  Q
    |||||||||||||||||||    | ||| || ||| ||||||||||||||| || ||||||||||||  ||   ||||||| ||| ||||||| ||||||    
T  40891055 ttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatacgaaaag 40891154  T
Q  233 cacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||| || |||||||||||    
T  40891155 cacctaaggaattgtacctaagtttt 40891180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 38520096 - 38520185
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| |||||||||||||||  ||   ||||||| |||||| |||| ||||||||| ||||||| || |||||||||||    
T  38520096 aactttgagaaaattatgaatttgaggaaatcatggtgaatttagttaaaaaacatacgaaaagcacttaaggaattgtacctaagtttt 38520185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 38629552 - 38629641
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| |||||||||||||||  ||   ||||||| ||| ||||||| ||||| ||||||||||| || |||||||||||    
T  38629552 aactttgagaaaattatgaatttgaggaaatcatggtgaatttagttaagaaccatacgaaaaacacctaaggaattgtacctaagtttt 38629641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 15882231 - 15882368
Alignment:
Q  126 tttttgcatgattcttaactaaaaatacat-----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaa 220  Q
    |||||| ||| |||||||||||||||||||     | ||| || ||| ||||||||||| ||| || ||||||| ||||  ||   ||||||| ||| ||    
T  15882231 tttttgtatggttcttaactaaaaatacatatttttttggatataactaactttgagaatattatggatttgagaaaatcatggtgaatttagttaagaa 15882330  T
Q  221 ccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||||||||||||||||| || |||||||||||    
T  15882331 ccatacgaaaagcacctaaggaattgtacctaagtttt 15882368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 10778699 - 10778765
Alignment:
Q  137 ttcttaactaaaaatacatt----gtggttaaaacgaactttgagaaaattgtgaatttgaggaaat 199  Q
    ||||||||||||||||||||    |||| || ||| ||||||||||| |||||||||||||||||||    
T  10778699 ttcttaactaaaaatacattttttgtggctataacaaactttgagaagattgtgaatttgaggaaat 10778765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 17426721 - 17426632
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| |  ||||||||||||  ||   ||||||| ||| ||||||| ||||||||||||| ||| || |||||||||||    
T  17426721 aactttgagaaaattatagatttgaggaaatcatggtgaatttagttaagaaccatacgaaaagcacctaatgaattgtacctaagtttt 17426632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 24741916 - 24741827
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||| |||||||||  || ||||||||||||  ||   ||||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  24741916 aactctgagaaaatcatggatttgaggaaatcatggtgaatttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 24741827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 13886576 - 13886538
Alignment:
Q  220 accatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  13886576 accatatgaaaaacacctaaggaaatgaacctaagtttt 13886538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 33385057 - 33385103
Alignment:
Q  269 tattgcactaaattcaaacataatgttcccaaggtgctagtgtattt 315  Q
    |||| ||||||||||||| |||| ||| |||||||||||||||||||    
T  33385057 tattacactaaattcaaatataaagttgccaaggtgctagtgtattt 33385103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 23940923 - 23940972
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||||||||||| ||||||||||||||||| || | |||||||||    
T  23940923 tttagttaaaaaccatacgaaaagcacctaaggaattgtaactaagtttt 23940972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 99 - 258
Target Start/End: Original strand, 34052283 - 34052446
Alignment:
Q  99 aaaacttgggtacatttctttacctattttttgcatgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgag 194  Q
    ||||||| |||||||||| |||  |  |||| | ||| |||||||||||||||||||    | ||| || ||| ||||||||||||||| ||||||||||    
T  34052283 aaaacttaggtacatttccttaggtgcttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatgaatttgag 34052382  T
Q  195 gaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||||  ||   ||||||||||| ||||||| ||||||||||||||||| || |||||||||||    
T  34052383 gaaatcatggtgaatttagctaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 34052446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 126 - 261
Target Start/End: Complemental strand, 30259206 - 30259067
Alignment:
Q  126 tttttgcatgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaac 221  Q
    |||||| ||| |||||||||||||||||||    | ||| || ||| ||||||||||||||| || ||||||| ||||  ||   ||||||| ||| |||    
T  30259206 tttttgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaagaac 30259107  T
Q  222 catatgaaaagcacctaaggaaatgcacctaagttttatc 261  Q
    |||| ||||||||||||||||| || ||||||||||||||    
T  30259106 cataggaaaagcacctaaggaattgtacctaagttttatc 30259067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 258
Target Start/End: Complemental strand, 20184406 - 20184242
Alignment:
Q  99 aaaacttgggtacatttctttacctattttttgcatgattcttaactaaaaatacat-----tgtggttaaaacgaactttgagaaaattgtgaatttga 193  Q
    ||||||| |||||| ||| ||| ||  |||| | |||||||||||||||||||||||     | ||| || ||| ||||||||||||||| || ||||||    
T  20184406 aaaacttaggtacaattccttagctgcttttcgtatgattcttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggatttga 20184307  T
Q  194 ggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||  ||   ||||||| ||| || |||| ||||||||||||||||| || |||||||||||    
T  20184306 ggaaatcatggtgaatttagttaagaatcatacgaaaagcacctaaggaattgtacctaagtttt 20184242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 258
Target Start/End: Complemental strand, 35339445 - 35339282
Alignment:
Q  99 aaaacttgggtacatttctttacctattttttgcatgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgag 194  Q
    ||||||| |||||| ||| |||  || |||| | ||| ||||||| |||||||||||    | ||| || ||| ||||||||||||||| || ||||||     
T  35339445 aaaacttaggtacaattccttatgtacttttcgtatggttcttaaataaaaatacatattttttggatataacaaactttgagaaaattatggatttgaa 35339346  T
Q  195 gaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||||  |||  ||||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  35339345 gaaatcatgatgaatttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 35339282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 24836098 - 24836187
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| || ||||||||||||  ||   ||||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  24836098 aactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 24836187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 258
Target Start/End: Complemental strand, 3953182 - 3953046
Alignment:
Q  126 tttttgcatgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaac 221  Q
    |||||| ||| |||||||||||||||||||    | ||| || ||| ||||||| ||||||| || ||||||||||||  ||   ||||||| |||||||    
T  3953182 tttttgtatggttcttaactaaaaatacatattttttggatataacaaactttgtgaaaattatggatttgaggaaatcatggtgaatttagttaaaaac 3953083  T
Q  222 catatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||| |||||| || ||||||| || |||||||||||    
T  3953082 catacgaaaagtacataaggaattgtacctaagtttt 3953046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 258
Target Start/End: Original strand, 10398388 - 10398486
Alignment:
Q  160 gttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||| ||| ||||||||||| ||| || ||||||||||||  ||  |||||||| ||| |||||||  |||||||  ||||||||||||||||||||||    
T  10398388 gttataacaaactttgagaagattatgtatttgaggaaatcatggataatttagttaagaaccatacaaaaagcatataaggaaatgcacctaagtttt 10398486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 31231707 - 31231618
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| || ||||||||||||  ||   ||||||| ||| |||||||  |||||||||||||||| || |||||||||||    
T  31231707 aactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatacaaaaagcacctaaggaattgtacctaagtttt 31231618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 137 - 254
Target Start/End: Original strand, 30594735 - 30594856
Alignment:
Q  137 ttcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaag 232  Q
    |||||||||||||||||||    | ||| || ||| ||||||||||||||| || ||||||||||||  ||   ||||||| ||| ||||||| ||||||    
T  30594735 ttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatacgaaaag 30594834  T
Q  233 cacctaaggaaatgcacctaag 254  Q
    || |||||||| || |||||||    
T  30594835 catctaaggaattgtacctaag 30594856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 38883263 - 38883388
Alignment:
Q  137 ttcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaag 232  Q
    |||||||||||||||||||    | ||| || ||| ||||||||||||||| || ||||||||||||  |||    ||||| ||| ||||||| ||||||    
T  38883263 ttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaaccatacgaaaag 38883362  T
Q  233 cacctaaggaaatgcacctaagtttt 258  Q
    || |||||||| || |||||||||||    
T  38883363 catctaaggaattgtacctaagtttt 38883388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 258
Target Start/End: Original strand, 33355301 - 33355340
Alignment:
Q  219 aaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  33355301 aaccacatgaaaagcacctaaggaaatgcacctaagtttt 33355340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 34052332 - 34052283
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| ||||||| |||||||||||||||||||| |||||||||||    
T  34052332 tttagttaagaaccatacgaaaagcacctaaggaaatgtacctaagtttt 34052283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 35665734 - 35665783
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||||||||||| ||||||||||||||||| || |||||||||||    
T  35665734 tttagttaaaaaccatacgaaaagcacctaaggaattgtacctaagtttt 35665783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 40358193 - 40358266
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaagga 242  Q
    ||||||||||||||| |||||||||||||||  ||   ||||||| ||| || |||| ||||||||||||||||    
T  40358193 aactttgagaaaattatgaatttgaggaaatcatggtgaatttagttaagaatcataggaaaagcacctaagga 40358266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 10936599 - 10936474
Alignment:
Q  137 ttcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaag 232  Q
    |||||||||||||||||||    | |||||| ||| ||||||||||||||| |  |||||||||| |  ||   ||||||| ||| |||| || ||||||    
T  10936599 ttcttaactaaaaatacatattttttggttataacaaactttgagaaaattatagatttgaggaagtcatggtgaatttagttaagaaccgtacgaaaag 10936500  T
Q  233 cacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||| || || ||||||||    
T  10936499 cacctaaggaattgtacataagtttt 10936474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 240
Target Start/End: Original strand, 37093796 - 37093917
Alignment:
Q  123 tattttttgcatgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaa 218  Q
    ||||||| | ||||||||||| |||||||| ||    | ||| || ||| ||||||||||||||| | |||||||||||||  ||   ||||||| ||||    
T  37093796 tatttttcgtatgattcttaattaaaaatatatattttttggatataacaaactttgagaaaattataaatttgaggaaatcatggtgaatttagttaaa 37093895  T
Q  219 aaccatatgaaaagcacctaag 240  Q
    ||||||| |||||| |||||||    
T  37093896 aaccatacgaaaagtacctaag 37093917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 10936588 - 10936637
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  10936588 tttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 10936637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 29277842 - 29277945
Alignment:
Q  99 aaaacttgggtacatttctttacctattttttgcatgattcttaactaaaaataca---ttgtggttaaaacgaactttgagaaaattgtgaatttgagg 195  Q
    ||||||| |||||| |||||||  || |||||| ||| ||||||||||||||||||   || ||| || ||| || |||||||||||| || |||| |||    
T  29277842 aaaacttaggtacaattctttaggtactttttgtatggttcttaactaaaaatacactgttttggatacaacaaagtttgagaaaattttggatttaagg 29277941  T
Q  196 aaat 199  Q
    ||||    
T  29277942 aaat 29277945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 31231734 - 31231783
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  31231734 tttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 31231783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 38528530 - 38528579
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  38528530 tttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 38528579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 33721879 - 33721831
Alignment:
Q  210 ttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  33721879 ttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 33721831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 50099512 - 50099601
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| |||||||||||||||| ||   ||||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  50099512 aactttgagaaaattatgaatttgaggaaattatggtgaatttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 50099601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 133 - 258
Target Start/End: Complemental strand, 13078296 - 13078167
Alignment:
Q  133 atgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatga 228  Q
    |||||||||||||||||||||||    | ||| || ||| ||||||||||||||| || |||| |||||||  ||   ||||||| ||| ||||||| ||    
T  13078296 atgattcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttaaggaaatcatggtgaatttagttaagaaccatacga 13078197  T
Q  229 aaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| ||||||||||||||    
T  13078196 aaagcacctaaggaattgcacctaagtttt 13078167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 3970620 - 3970495
Alignment:
Q  137 ttcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaag 232  Q
    |||||||||||||||||||    | ||| || ||| ||||||||||||||| || |||| |||||||  ||   ||||||| ||| ||||||| ||||||    
T  3970620 ttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttaaggaaatcatggtgaatttagttaagaaccatacgaaaag 3970521  T
Q  233 cacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||| ||||||||||||||    
T  3970520 cacctaaggaattgcacctaagtttt 3970495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 45487841 - 45487966
Alignment:
Q  137 ttcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaag 232  Q
    |||||||||||||||||||    | ||| || ||| ||| ||||||||||| |||||||||||||||  ||   ||||||| ||| ||||||| ||||||    
T  45487841 ttcttaactaaaaatacatattttttggatataacaaacattgagaaaattatgaatttgaggaaatcatggtgaatttagttaagaaccatacgaaaag 45487940  T
Q  233 cacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||| || |||||||||||    
T  45487941 cacctaaggaattgtacctaagtttt 45487966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 21969286 - 21969161
Alignment:
Q  137 ttcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaag 232  Q
    |||||||||||||||||||    | ||| || ||| ||||||||||||||| || |||| |||||||  ||   ||||||| ||| ||||||| ||||||    
T  21969286 ttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttaaggaaatcatggtgaatttagttaagaaccatacgaaaag 21969187  T
Q  233 cacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||| || |||||||||||    
T  21969186 cacctaaggaattgtacctaagtttt 21969161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 21991722 - 21991597
Alignment:
Q  137 ttcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaag 232  Q
    |||||||||||||||||||    | ||| || ||| ||||||||||||||| || |||| |||||||  ||   ||||||| ||| ||||||| ||||||    
T  21991722 ttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttaaggaaatcatggtgaatttagttaagaaccatacgaaaag 21991623  T
Q  233 cacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||| || |||||||||||    
T  21991622 cacctaaggaattgtacctaagtttt 21991597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 12838108 - 12838244
Alignment:
Q  126 tttttgcatgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaac 221  Q
    |||||| ||| |||||||||||||||||||    | ||| || ||| ||||||||||||||| || ||||||||||||  ||   ||||||| |||||||    
T  12838108 tttttgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaaaaac 12838207  T
Q  222 catatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||| ||||| ||||||| ||| || || ||||||||    
T  12838208 catacgaaaaacacctaaagaattgtacataagtttt 12838244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 1476669 - 1476721
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagttttatc 261  Q
    ||||| ||| ||||||||||||||||||||||||| || ||||||||||||||    
T  1476669 tttagttaagaaccatatgaaaagcacctaaggaattgtacctaagttttatc 1476721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 258
Target Start/End: Complemental strand, 4072441 - 4072277
Alignment:
Q  99 aaaacttgggtacatttctttacctattttttgcatgattcttaactaaaaatacat-----tgtggttaaaacgaactttgagaaaattgtgaatttga 193  Q
    ||||||| |||||| ||| |||  | ||||| | ||| |||||||||||||||||||     | ||| || ||| ||||||||||||||| || ||| ||    
T  4072441 aaaacttaggtacaattccttaggtgtttttcgtatggttcttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggattcga 4072342  T
Q  194 ggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||  ||   ||||||| ||| ||||||| |||||||||||||| || || |||||||||||    
T  4072341 ggaaatcatggtgaatttagttaagaaccatacgaaaagcacctaagaaattgtacctaagtttt 4072277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 25446291 - 25446402
Alignment:
Q  137 ttcttaactaaaaatacat-----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaa 231  Q
    |||||||||||||||||||     | ||| || ||| ||||||||||||||| || ||||||||||||  ||   ||||||| ||| ||||||| |||||    
T  25446291 ttcttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatacgaaaa 25446390  T
Q  232 gcacctaaggaa 243  Q
    ||||||||||||    
T  25446391 gcacctaaggaa 25446402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 297630 - 297541
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaa-tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||| |||||||||| || |||| || ||||||| ||||| ||||||||| ||||||| |||||||||| |||||| || |||||||||||    
T  297630 aactatgagaaaattatggatttcagaaaattgt-agtaaatttagctaagaaccatacgaaaagcaccaaaggaattgtacctaagtttt 297541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 10117557 - 10117678
Alignment:
Q  137 ttcttaactaaaaatacat-----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaa 231  Q
    |||||||||||||||||||     | ||| || ||| ||||||||||||||| || ||||||| ||||||     ||||||| ||| ||||||| |||||    
T  10117557 ttcttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggatttgagaaaattg-----aatttagttaagaaccatacgaaaa 10117651  T
Q  232 gcacctaaggaaatgcacctaagtttt 258  Q
    |||||||||||| || |||||| ||||    
T  10117652 gcacctaaggaattgtacctaaatttt 10117678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 10254610 - 10254736
Alignment:
Q  137 ttcttaactaaaaatacat-----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaa 231  Q
    |||||||||||||||||||     | ||| || ||| |||||||| |||||| || ||||||| ||||  |||  ||||||| ||| ||||||| |||||    
T  10254610 ttcttaactaaaaatacatatttttttggatataacaaactttgaaaaaattatggatttgagaaaatcatgatgaatttagttaagaaccatacgaaaa 10254709  T
Q  232 gcacctaaggaaatgcacctaagtttt 258  Q
    |||||||||||| || |||||| ||||    
T  10254710 gcacctaaggaattgtacctaaatttt 10254736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 10017167 - 10017118
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| ||||||||||||||||||||||||| || |||||||||||    
T  10017167 tttagttaagaaccatatgaaaagcacctaaggaattgtacctaagtttt 10017118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 10117568 - 10117519
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| ||||||||||||||||||||||||| || |||||||||||    
T  10117568 tttagttaagaaccatatgaaaagcacctaaggaactgtacctaagtttt 10117519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 10254621 - 10254572
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| ||||||||||||||||||||||||| || |||||||||||    
T  10254621 tttagttaagaaccatatgaaaagcacctaaggaattgtacctaagtttt 10254572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 36657526 - 36657437
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| || ||||||||||||  |||    ||||| ||| ||||||| |||||||| |||||||| || |||||||||||    
T  36657526 aactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaaccatacgaaaagcatctaaggaattgtacctaagtttt 36657437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 43150533 - 43150484
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||||||||||| ||||||||||| ||||| ||||||||||||||    
T  43150533 tttagttaaaaaccatacgaaaagcacctgaggaattgcacctaagtttt 43150484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 243
Target Start/End: Original strand, 12789610 - 12789758
Alignment:
Q  99 aaaacttgggtacatttctttacctattttttgcatgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgag 194  Q
    ||||||| |||||| ||| |||  | ||||| | ||| |||||||||||||||||||    | ||| || ||| |||||||| |||||| ||||||||||    
T  12789610 aaaacttaggtacaattccttaggtgtttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgaaaaaattatgaatttgag 12789709  T
Q  195 gaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaa 243  Q
    |||||  ||   ||||||  ||| |||||||  ||||||||||||||||    
T  12789710 gaaatcatggtgaatttaattaagaaccatacaaaaagcacctaaggaa 12789758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 37536939 - 37537029
Alignment:
Q  160 gttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacc 250  Q
    |||| ||| ||||||||||||||| || ||| ||||||||| | | |||||||| ||| |||||||  ||||| |  ||||||||||||||    
T  37536939 gttataacaaactttgagaaaattatggattagaggaaattataaataatttagttaagaaccatacaaaaagtatttaaggaaatgcacc 37537029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 8831819 - 8831908
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| || |||||| |||||  ||   ||||||| ||| ||||||| |||||||||||||  || || |||||||||||    
T  8831819 aactttgagaaaattatggatttgaagaaatcatggtgaatttagttaagaaccatacgaaaagcacctaaaaaattgtacctaagtttt 8831908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 13724080 - 13723992
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| ||||||||| |||||  ||   ||||||| ||| |||||||  ||||||||||||| || || |||||||||||    
T  13724080 aactttgagaaaattatgaatttgaagaaatcatggtgaatttag-taagaaccatacaaaaagcacctaagaaattgtacctaagtttt 13723992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 21969275 - 21969324
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  21969275 tttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 21969324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 21991711 - 21991760
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  21991711 tttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 21991760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 32237487 - 32237398
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| || || |||| ||||  ||   ||||||| ||| ||||||| ||||| ||||||||||| || |||||||||||    
T  32237487 aactttgagaaaattatggatctgagaaaatcatggtaaatttagttaagaaccatacgaaaaacacctaaggaattgtacctaagtttt 32237398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 35368811 - 35368900
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| || ||||||| ||||  ||   ||||||| ||||||||||| ||||| ||| |||| || || |||||||||||    
T  35368811 aactttgagaaaattatggatttgagaaaatcatggtgaatttagttaaaaaccatacgaaaaacacataagaaattgtacctaagtttt 35368900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 45487852 - 45487803
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  45487852 tttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 45487803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 46679339 - 46679428
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| || ||||||||||||| ||   ||||||| ||| |||| ||| ||||||| | |||||| || || ||||||||    
T  46679339 aactttgagaaaattatggatttgaggaaattatggtgaatttagttaagaaccgtataaaaagcatccaaggaattgtacttaagtttt 46679428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 243
Target Start/End: Complemental strand, 25488481 - 25488360
Alignment:
Q  126 tttttgcatgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaac 221  Q
    |||||| ||| |||||||||||||||||||    | ||| || ||| ||||||||||||||| || || ||| |||||  ||   ||||||| ||| |||    
T  25488481 tttttgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatatgaagaaatcatggtgaatttagttaagaac 25488382  T
Q  222 catatgaaaagcacctaaggaa 243  Q
     ||| |||||||||||||||||    
T  25488381 tatacgaaaagcacctaaggaa 25488360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 243
Target Start/End: Original strand, 25561042 - 25561163
Alignment:
Q  126 tttttgcatgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaac 221  Q
    |||||| ||| |||||||||||||||||||    | ||| || ||| ||||||||||||||| || || ||| |||||  ||   ||||||| ||| |||    
T  25561042 tttttgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatatgaagaaatcatggtgaatttagttaagaac 25561141  T
Q  222 catatgaaaagcacctaaggaa 243  Q
     ||| |||||||||||||||||    
T  25561142 tatacgaaaagcacctaaggaa 25561163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 27434652 - 27434777
Alignment:
Q  137 ttcttaactaaaaatacattgt----ggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaag 232  Q
    |||||||||||||||||||| |    || || ||| ||||||||||||||| |||||||||||||||| ||   ||||||| ||| ||||||| ||||||    
T  27434652 ttcttaactaaaaatacattttttttggatataacaaactttgagaaaattatgaatttgaggaaattatggtaaatttagttaagaaccatacgaaaag 27434751  T
Q  233 cacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||| || || ||||||||    
T  27434752 cacctaaggaattgtacttaagtttt 27434777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 1298943 - 1299079
Alignment:
Q  126 tttttgcatgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaac 221  Q
    |||||| ||| |||||||||||||||||||    | ||| || ||| ||||||||||||||| || ||||||| ||||  ||   ||||||| ||| |||    
T  1298943 tttttgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaagaac 1299042  T
Q  222 catatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||| ||||||||||||||||| || |||||||||||    
T  1299043 cataagaaaagcacctaaggaattgtacctaagtttt 1299079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 24969634 - 24969545
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| |||||||||||||||  ||   ||||||| ||| ||||||| ||||||||||||| ||| || |||||||||||    
T  24969634 aactttgagaaaattatgaatttgaggaaatcatggtgaatttagttaagaaccatacgaaaagcacctaaagaattgtacctaagtttt 24969545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 530798 - 530673
Alignment:
Q  137 ttcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaag 232  Q
    |||||||||||||||||||    | ||| || ||| ||||||||||||||| || ||||||||||||  ||   ||||||| ||| |||||||  |||||    
T  530798 ttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatgatggtgaatttagttaagaaccatacaaaaag 530699  T
Q  233 cacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||| || |||||||||||    
T  530698 cacctaaggaattgtacctaagtttt 530673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 13204408 - 13204544
Alignment:
Q  126 tttttgcatgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaac 221  Q
    |||||| ||| |||||||||||||||||||    | ||| || ||| ||||||| ||||||| || ||||||||||||  ||   ||||||| |||||||    
T  13204408 tttttgtatggttcttaactaaaaatacatattttttggatataacaaactttgtgaaaattatggatttgaggaaatcatggtgaatttagttaaaaac 13204507  T
Q  222 catatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||| |||||| || ||||||| || |||||||||||    
T  13204508 catacgaaaagtacataaggaattgtacctaagtttt 13204544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 258
Target Start/End: Complemental strand, 47452917 - 47452814
Alignment:
Q  155 ttgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaag 254  Q
    |||| |||| ||| ||||| | |||||||||| |||||||||||   || ||| || || ||| ||||||||||||||||||| |||||||| |||||||    
T  47452917 ttgtagttataacaaacttcgggaaaattgtggatttgaggaaaacatgggtagttaagttaagaaccatatgaaaagcaccttaggaaatgaacctaag 47452818  T
Q  255 tttt 258  Q
    ||||    
T  47452817 tttt 47452814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 4688340 - 4688251
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagt-aatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||||||||||||||||||||||||||||| |   ||| ||||||| ||| ||||||| |||||||||||||| || || |||||||||||    
T  4688340 aactttgagaaaattgtgaatttgaggaaa-tcacagtgaatttagttaagaaccatacgaaaagcacctaagaaattgtacctaagtttt 4688251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 24915887 - 24915798
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| || ||||||| ||||  ||   ||||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  24915887 aactttgagaaaattatggatttgagaaaatcatggtgaatttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 24915798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 42274585 - 42274496
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| || ||||||||||||  ||   ||||||| ||| ||||||| |||||||| |||||||| || |||||||||||    
T  42274585 aactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatacgaaaagcatctaaggaattgtacctaagtttt 42274496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 55107566 - 55107691
Alignment:
Q  137 ttcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaag 232  Q
    |||||||||||||||||||    | ||| || ||| ||||||||||||||| || ||||||||||||  ||   |||||||  || |||||||  |||||    
T  55107566 ttcttaactaaaaatacatattatttggatataacaaactttgagaaaattatgcatttgaggaaatcatggtaaatttagtaaagaaccatacaaaaag 55107665  T
Q  233 cacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||| || |||||||||||    
T  55107666 cacctaaggaattgtacctaagtttt 55107691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 243
Target Start/End: Complemental strand, 20435307 - 20435159
Alignment:
Q  99 aaaacttgggtacatttctttacctattttttgcatgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgag 194  Q
    ||||||| |||||| |||||||  |  |||| | ||| |||||||||||||||||||    | ||| || ||| ||||| ||||||||| || |||||||    
T  20435307 aaaacttaggtacaattctttaggtgcttttcgtatggttcttaactaaaaatacatattttttggatataacaaacttcgagaaaattatggatttgag 20435208  T
Q  195 gaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaa 243  Q
    |||||  |||  ||||||| ||| ||||||| |||||||| ||||||||    
T  20435207 gaaatcatgatgaatttagttaagaaccatacgaaaagcatctaaggaa 20435159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 3017396 - 3017306
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaa-tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||| ||||||||||||||||| |||||  ||||||| ||||| ||  |||||||  |||| |||||| ||||||||||||| |||||    
T  3017396 aactttgtgaaaattgtgaatttgaagaaatcatgagtaagtttagttaggaaccataaaaaaaacacctatggaaatgcacctaggtttt 3017306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 4552838 - 4552789
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||||||||||||||||||||| ||||||| || |||||||||||    
T  4552838 tttagttaaaaaccatatgaaaagcacttaaggaattgtacctaagtttt 4552789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 18417735 - 18417824
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| || ||||||||||||  ||   ||||||  ||| |||||||  |||||||||||||||| || |||||||||||    
T  18417735 aactttgagaaaattatggatttgaggaaatcatggtgaatttaattaagaaccatacaaaaagcacctaaggaattgtacctaagtttt 18417824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 32318813 - 32318724
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| || || |||||||||  ||   ||||||| ||| ||||||| ||||||||| ||||||| || |||||||||||    
T  32318813 aactttgagaaaattatggatctgaggaaatcatggtgaatttagttaagaaccatacgaaaagcacataaggaattgtacctaagtttt 32318724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 249
Target Start/End: Original strand, 56552128 - 56552218
Alignment:
Q  158 tggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcac 249  Q
    |||||| ||| ||||||||||||||| || ||||||||||||  ||  |||||||  ||| ||||||| || ||||| ||||||||||||||    
T  56552128 tggttataacaaactttgagaaaattatggatttgaggaaatcatggttaatttatttaagaaccatacgataagca-ctaaggaaatgcac 56552218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 21048833 - 21048709
Alignment:
Q  137 ttcttaactaaaaatacat---tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagc 233  Q
    |||||||||||||||||||   | | | || ||| ||||| ||||||||| || ||||||||||||  ||   ||||||| ||| ||||||| |||||||    
T  21048833 ttcttaactaaaaatacatattttttgatataacaaacttcgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatacgaaaagc 21048734  T
Q  234 acctaaggaaatgcacctaagtttt 258  Q
    | |||| ||| || |||||||||||    
T  21048733 atctaacgaattgtacctaagtttt 21048709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 256
Target Start/End: Original strand, 42906861 - 42906943
Alignment:
Q  174 tgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtt 256  Q
    |||||||| |||| |||||| |||||  | |||||||||| ||  ||||||| |||||||||||||  ||||||||| |||||    
T  42906861 tgagaaaactgtggatttgaagaaatcataagtaatttagttaggaaccataggaaaagcacctaataaaatgcaccaaagtt 42906943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 530787 - 530836
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  530787 tttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 530836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 4552863 - 4552952
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| || ||||||||||||  |||  ||||||| ||| |||||||   ||||||  ||||||| || |||||||||||    
T  4552863 aactttgagaaaattatggatttgaggaaatcatgatgaatttagttaagaaccatacagaaagcatataaggaattgtacctaagtttt 4552952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 9355641 - 9355572
Alignment:
Q  174 tgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaa 243  Q
    |||||||||| || |||| |||||||  ||   ||||||| ||| |||||||||||||||||||||||||    
T  9355641 tgagaaaattatggatttaaggaaatcatggtgaatttagttaagaaccatatgaaaagcacctaaggaa 9355572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 18417710 - 18417661
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  18417710 tttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 18417661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 24294545 - 24294636
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaa---agcacctaaggaaatgcacctaagttt 257  Q
    |||||||||||||||  ||||||||||||||| ||   ||||||| ||| ||||||| ||||   | ||||||||||| || ||||||||||    
T  24294545 aactttgagaaaattacgaatttgaggaaattatggtgaatttagttaagaaccatacgaaaaacaccacctaaggaattgtacctaagttt 24294636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 47465102 - 47465151
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| |||||| |||||||||||||||||| ||| || |||||||||||    
T  47465102 tttagttaaaaatcatatgaaaagcacctaaagaattgtacctaagtttt 47465151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 52824292 - 52824243
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  52824292 tttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 52824243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 55107577 - 55107528
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| ||||||||||||||||| ||||||| || |||||||||||    
T  55107577 tttagttaagaaccatatgaaaagcacataaggaattgtacctaagtttt 55107528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 99 - 258
Target Start/End: Original strand, 15546636 - 15546799
Alignment:
Q  99 aaaacttgggtacatttctttacctattttttgcatgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgag 194  Q
    ||||||| |||||| ||| |||  | ||||||| ||| |||||||||||||||||||    | ||| || ||| ||||||||||||||| || |||||||    
T  15546636 aaaacttaggtacaattccttagttgttttttgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgag 15546735  T
Q  195 gaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||||  ||   ||||||  ||| ||||||| ||||||||||||||||| || |||||||||||    
T  15546736 gaaatcatggtaaatttaattaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 15546799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 21380070 - 21379945
Alignment:
Q  137 ttcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaag 232  Q
    |||||||||||||||||||    | ||| || ||| ||| ||||||||||| |||||||||||||||  ||   ||||||| ||| ||||||| ||||||    
T  21380070 ttcttaactaaaaatacatattttttggatataacaaacattgagaaaattatgaatttgaggaaatcatggtgaatttagttaagaaccatacgaaaag 21379971  T
Q  233 cacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||| || |||||||||||    
T  21379970 cacctaaggaattgtacctaagtttt 21379945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 885416 - 885552
Alignment:
Q  126 tttttgcatgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaac 221  Q
    |||||| ||| |||||||||||||||||||    | ||| || ||| ||||||||||||||| || ||||||| ||||  |||  ||||||| ||| ||     
T  885416 tttttgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgagaaaatcatgatgaatttagttaagaat 885515  T
Q  222 catatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||| ||||||||||||||||| || |||||||||||    
T  885516 cataggaaaagcacctaaggaattgtacctaagtttt 885552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 4890573 - 4890484
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| |||||||||||||||  ||   ||||||| ||| ||||||| ||||| |||||||| || || |||||||||||    
T  4890573 aactttgagaaaattatgaatttgaggaaatcatggtaaatttagttaagaaccatacgaaaaacacctaagaaattgtacctaagtttt 4890484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 258
Target Start/End: Original strand, 14393599 - 14393731
Alignment:
Q  133 atgattcttaactaaaaatacat-------tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccata 225  Q
    |||||||||||||||||||||||       | ||| || ||| ||||||||||||||| || ||||||||||||  ||   ||||||| ||| |||||||    
T  14393599 atgattcttaactaaaaatacatatttctttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccata 14393698  T
Q  226 tgaaaagcacctaaggaaatgcacctaagtttt 258  Q
      |||||||||||||||| |  |||||||||||    
T  14393699 caaaaagcacctaaggaattatacctaagtttt 14393731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 11687236 - 11687147
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| || ||||||||||||  |||    ||||| ||| ||||||| |||||||| |||||||| || |||||||||||    
T  11687236 aactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaaccatacgaaaagcatctaaggaattgtacctaagtttt 11687147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 7808687 - 7808776
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaattt-agctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| |  ||||||||||||  || ||| ||| || ||| ||||||| ||||||||||||||||| || |||||||||||    
T  7808687 aactttgagaaaattatagatttgaggaaatcatg-gtatttttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 7808776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 21380059 - 21380108
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  21380059 tttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 21380108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 258
Target Start/End: Complemental strand, 33533997 - 33533964
Alignment:
Q  225 atgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||| ||||||||||||||||||||||||||    
T  33533997 atgaaaaacacctaaggaaatgcacctaagtttt 33533964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 253
Target Start/End: Original strand, 3369063 - 3369147
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaa 253  Q
    ||||||||||||||| |||||||||||||||  ||   ||||||| ||  ||| ||| ||||||||||||| ||| || ||||||    
T  3369063 aactttgagaaaattatgaatttgaggaaatcatggtgaatttagttaggaacgatacgaaaagcacctaacgaattgtacctaa 3369147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 99 - 258
Target Start/End: Original strand, 45408629 - 45408792
Alignment:
Q  99 aaaacttgggtacatttctttacctattttttgcatgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgag 194  Q
    ||||||| |||||| ||| |||  | ||||||| ||| |||||||||||||||||||    | ||| || ||| ||||||||||||||| || |||||||    
T  45408629 aaaacttaggtacaattccttaggtgttttttgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgag 45408728  T
Q  195 gaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||||  ||   ||||||  ||| ||||||| ||||||||||||||||| || |||||||||||    
T  45408729 gaaatcatggtaaatttaattaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 45408792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 24101961 - 24101836
Alignment:
Q  137 ttcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagta-atttagctaaaaaccatatgaaaa 231  Q
    |||||||||||||||||||    | ||| || ||| ||||||||||||||| || ||||||||||||  || ||| |||||| ||| ||||||| |||||    
T  24101961 ttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatg-gtatatttagttaagaaccatacgaaaa 24101863  T
Q  232 gcacctaaggaaatgcacctaagtttt 258  Q
    |||||||||||| || |||||||||||    
T  24101862 gcacctaaggaattgtacctaagtttt 24101836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 261
Target Start/End: Complemental strand, 12850671 - 12850543
Alignment:
Q  137 ttcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaag 232  Q
    |||||||||||||||||||    | ||| || ||| ||||||||||||||| || ||||||||||||  ||   ||||||| |||||||||||  |||||    
T  12850671 ttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatggtaaatttagttaaaaaccatacaaaaag 12850572  T
Q  233 cacctaaggaaatgcacctaagttttatc 261  Q
     |||||||||| || |||||| |||||||    
T  12850571 tacctaaggaattgtacctaaattttatc 12850543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 258
Target Start/End: Original strand, 34490460 - 34490623
Alignment:
Q  99 aaaacttgggtacatttctttacctattttttgcatgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgag 194  Q
    ||||||| |||||| |||||||  | ||||| | ||| |||||||||||||||||||    | ||| || ||| ||||||||||||||| || || ||||    
T  34490460 aaaacttaggtacaattctttaggtgtttttcgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatctgag 34490559  T
Q  195 gaaattgtgagtaattt-agctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||||  || ||| ||| || ||| ||||||| ||||||||||||||||| || |||||||||||    
T  34490560 gaaatcatg-gtatttttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 34490623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 133 - 258
Target Start/End: Original strand, 7737102 - 7737232
Alignment:
Q  133 atgattcttaactaaaaatacat-----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatg 227  Q
    |||||||||||||||||||||||     | ||| || ||| ||||||||||||||| ||  |||||||||||  ||   ||||||| ||| || |||| |    
T  7737102 atgattcttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggctttgaggaaatcatggtaaatttagttaagaatcatacg 7737201  T
Q  228 aaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||||||||||||||| || |||||||||||    
T  7737202 aaaagcacctaaggaattgtacctaagtttt 7737232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 258
Target Start/End: Complemental strand, 1924148 - 1923984
Alignment:
Q  99 aaaacttgggtacatttctttacctattttttgcatgattcttaactaaaaatacat-----tgtggttaaaacgaactttgagaaaattgtgaatttga 193  Q
    ||||||| |||||| ||| |||  | ||||| | ||| |||||||||||||||||||     | ||| || ||| ||||||||||||||| || ||| ||    
T  1924148 aaaacttaggtacaattccttaggtgtttttcgtatggttcttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggattcga 1924049  T
Q  194 ggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||  ||   ||||||| ||| ||||||| |||||||||||||| || || |||||||||||    
T  1924048 ggaaatcatggtgaatttagttaagaaccatacgaaaagcacctaagaaattgtacctaagtttt 1923984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 133 - 258
Target Start/End: Original strand, 2818704 - 2818833
Alignment:
Q  133 atgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatga 228  Q
    |||||||||||||||||||||||    | ||| || | | ||||||||||||||| || ||||||||||||  ||   ||||||| ||| ||||||| ||    
T  2818704 atgattcttaactaaaaatacatattttttggatatatcaaactttgagaaaattatggatttgaggaaatcatggtgaatttagttaagaaccatacga 2818803  T
Q  229 aaagcacctaaggaaatgcacctaagtttt 258  Q
    ||| ||||||| ||| || |||||||||||    
T  2818804 aaaacacctaaagaattgtacctaagtttt 2818833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 258
Target Start/End: Original strand, 22269726 - 22269889
Alignment:
Q  99 aaaacttgggtacatttctttacctattttttgcatgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgag 194  Q
    ||||||| |||||| ||| |||  | ||||| | |||||| ||||||||||||||||    | ||| || ||| ||||||||||||||| || |||||||    
T  22269726 aaaacttaggtacaattccttaggtgtttttcgtatgatttttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgag 22269825  T
Q  195 gaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||||  ||  |  ||||| ||| ||||||| |||||||| |||||||| || || ||||||||    
T  22269826 gaaatcatgttttttttagttaagaaccatacgaaaagcatctaaggaattgtacgtaagtttt 22269889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 43476024 - 43476098
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaa 243  Q
    ||||||||||||||| |||||||||||||||  ||   ||||||| ||| ||||||| ||||| |||||||||||    
T  43476024 aactttgagaaaattatgaatttgaggaaatcatggtgaatttagttaagaaccatacgaaaaacacctaaggaa 43476098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 258
Target Start/End: Original strand, 6605776 - 6605901
Alignment:
Q  136 attcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaa 231  Q
    ||||||||||||||||||||    | ||| || ||| ||||||||||||||| || ||||||||||||  ||   ||||||| ||| |||||||  ||||    
T  6605776 attcttaactaaaaatacatattatttggatataacaaactttgagaaaattatgcatttgaggaaatcatggtaaatttag-taagaaccatacaaaaa 6605874  T
Q  232 gcacctaaggaaatgcacctaagtttt 258  Q
    |||||||| ||| || |||||||||||    
T  6605875 gcacctaaagaattgtacctaagtttt 6605901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 3116918 - 3117043
Alignment:
Q  137 ttcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaag 232  Q
    |||||||||||||||||||    | ||| || ||| ||||||||||||||| || ||||||| ||||  | |  ||||||| ||| ||||||| ||||||    
T  3116918 ttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgagaaaatcataatgaatttagttaagaaccatacgaaaag 3117017  T
Q  233 cacctaaggaaatgcacctaagtttt 258  Q
    || ||| |||| || |||||||||||    
T  3117018 cagctatggaattgtacctaagtttt 3117043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 258
Target Start/End: Original strand, 16705849 - 16705900
Alignment:
Q  207 aatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||| ||||||||||| ||||||||||||||||| || |||||| ||||    
T  16705849 aatttagttaaaaaccatacgaaaagcacctaaggaattgtacctaaatttt 16705900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 258
Target Start/End: Complemental strand, 18034575 - 18034536
Alignment:
Q  219 aaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  18034575 aaccatatgaaaagcacctaagaatatgcacctaagtttt 18034536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 16705786 - 16705737
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  16705786 tttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 16705737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 22346493 - 22346542
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||||||||||| ||||||||| || |||||||||||||| ||||    
T  22346493 tttagttaaaaaccatacgaaaagcacatacggaaatgcacctaaatttt 22346542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 45865 - 46001
Alignment:
Q  126 tttttgcatgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaac 221  Q
    |||||| ||| |||||||||||||||||||    | ||| || ||| ||||||||||||||| || ||||||| ||||  ||   ||||||| ||| |||    
T  45865 tttttgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgagaaaatcatggtgaatttagttaagaac 45964  T
Q  222 catatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||| ||||||||||||||||| || |||||||||||    
T  45965 cataagaaaagcacctaaggaattgtacctaagtttt 46001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 20476512 - 20476598
Alignment:
Q  172 tttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||||||||||| || ||||||||||||  |||  ||||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  20476512 tttgagaaaattatggatttgaggaaatcatgatgaatttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 20476598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 258
Target Start/End: Original strand, 12744856 - 12744993
Alignment:
Q  125 ttttttgcatgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaa 220  Q
    ||||||| ||| || ||||||||||||||||    | ||| || ||| ||||||||||||||| |||||||||||||||  ||   |||||||  |||||    
T  12744856 ttttttgtatggtttttaactaaaaatacatattttttggatataacaaactttgagaaaattatgaatttgaggaaatcatggtgaatttagtcaaaaa 12744955  T
Q  221 ccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
     |||| ||||| ||||||||||| || |||||||||||    
T  12744956 tcatacgaaaaacacctaaggaattgtacctaagtttt 12744993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 13754384 - 13754295
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| |||||||||||||||| ||   ||||||| ||| || |||| ||||| ||| ||||||| || |||||||||||    
T  13754384 aactttgagaaaattatgaatttgaggaaattatggtgaatttagttaagaatcatacgaaaaacacataaggaattgtacctaagtttt 13754295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 15855921 - 15856010
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| || ||||||||||||  |||    ||||| ||| ||||||| |||||||| |||||||| || |||||||||||    
T  15855921 aactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaaccatacgaaaagcatctaaggaattgtacctaagtttt 15856010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 16473033 - 16473122
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| || ||||||||||||  |||    ||||| ||| ||||||| |||||||| |||||||| || |||||||||||    
T  16473033 aactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaaccatacgaaaagcatctaaggaattgtacctaagtttt 16473122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 21261985 - 21262095
Alignment:
Q  137 ttcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaag 232  Q
    |||||||||||||||||||    | ||| || ||| |||||||||||||||||| ||||||||||||  |||  ||||||| ||| |||||||  |||||    
T  21261985 ttcttaactaaaaatacatattttttggatataacaaactttgagaaaattgtggatttgaggaaatcatgatgaatttagttaagaaccatacaaaaag 21262084  T
Q  233 cacctaaggaa 243  Q
    |  ||||||||    
T  21262085 ctgctaaggaa 21262095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 35420705 - 35420616
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| || ||||||||||||  |||    ||||| ||| ||||||| |||||||| |||||||| || |||||||||||    
T  35420705 aactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaaccatacgaaaagcatctaaggaattgtacctaagtttt 35420616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 1138601 - 1138726
Alignment:
Q  137 ttcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaag 232  Q
    |||||||||||||||||||    | ||| || ||| ||||||||||||||| || ||||||| ||||  | |  ||||||| ||| ||||||| ||||||    
T  1138601 ttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgagaaaatcataatgaatttagttaagaaccatacgaaaag 1138700  T
Q  233 cacctaaggaaatgcacctaagtttt 258  Q
    || ||| |||| || |||||||||||    
T  1138701 cagctatggaattgtacctaagtttt 1138726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 21259859 - 21259734
Alignment:
Q  137 ttcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaag 232  Q
    |||||||||||||||||||    | ||| || ||| ||||||||||||||| ||| |||||||||||  ||   |||||| |||| ||||||| ||||||    
T  21259859 ttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatgattttgaggaaatcatggtgaatttaactaagaaccatacgaaaag 21259760  T
Q  233 cacctaaggaaatgcacctaagtttt 258  Q
    ||| ||| ||| || || ||||||||    
T  21259759 cacataaagaattgtacgtaagtttt 21259734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 37655291 - 37655217
Alignment:
Q  126 tttttgcatgattcttaactaaaaatacat---tgtggttaaaacgaactttgagaaaattgtgaatttgaggaa 197  Q
    |||||| ||| |||||||||||||||||||   | | |||| ||| ||||||||||||||| |||||||||||||    
T  37655291 tttttgtatggttcttaactaaaaatacatattttttgttataacaaactttgagaaaattatgaatttgaggaa 37655217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 10499941 - 10499904
Alignment:
Q  221 ccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  10499941 ccatacgaaaaacacctaaggaaatgcacctaagtttt 10499904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 24397364 - 24397413
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  24397364 tttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 24397413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 258
Target Start/End: Complemental strand, 19955078 - 19954915
Alignment:
Q  99 aaaacttgggtacatttctttacctattttttgcatgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgag 194  Q
    ||||||| |||||| ||| |||  || |||||| ||| |||||||||||||||||||    | ||| || ||| ||||||||||||||| || |||||||    
T  19955078 aaaacttaggtacaattccttaggtactttttgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgag 19954979  T
Q  195 gaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||||  ||   ||||||| ||| ||| ||| ||||||||| ||||||| || |||||||||||    
T  19954978 gaaatcatggtgaatttagttaagaactatacgaaaagcacataaggaattgtacctaagtttt 19954915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 48954307 - 48954218
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagt-aatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| |||||||||||||||  | ||| ||||||| ||| |||||||||||||| |||||||||| || |||||||||||    
T  48954307 aactttgagaaaattatgaatttgaggaaatcat-agtgaatttagttaagaaccatatgaaaagtacctaaggaattgtacctaagtttt 48954218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 40647196 - 40647285
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| || ||||||||||||  ||   ||||||| |||||| |||| ||||||||||||||||| || |||||||||||    
T  40647196 aactttgagaaaattatggatttgaggaaatcatggtgaatttagttaaaaatcatacgaaaagcacctaaggaattgtacctaagtttt 40647285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 27241017 - 27240928
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| || ||||||| ||||  ||   ||||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  27241017 aactttgagaaaattatggatttgagaaaatcatggtgaatttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 27240928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 261
Target Start/End: Complemental strand, 36007922 - 36007821
Alignment:
Q  160 gttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttta 259  Q
    |||| ||| ||||||||||||||| || ||||||||||||  ||  || ||||| ||| |||| ||  |||| |||||||||||||||||| ||||||||    
T  36007922 gttataacaaactttgagaaaattatgtatttgaggaaatcatggatagtttagttaagaaccgtaccaaaaacacctaaggaaatgcacccaagtttta 36007823  T
Q  260 tc 261  Q
    ||    
T  36007822 tc 36007821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 258
Target Start/End: Complemental strand, 47940738 - 47940574
Alignment:
Q  99 aaaacttgggtacatttctttacctattttttgcatgattcttaactaaaaatacat-----tgtggttaaaacgaactttgagaaaattgtgaatttga 193  Q
    ||||||| |||||| ||| |||  | ||||| | ||| |||||||||||||||||||     | ||| || ||| ||||||||||||||| || ||| ||    
T  47940738 aaaacttaggtacaattccttaggtgtttttcgtatggttcttaactaaaaatacatatttttttggatataacaaactttgagaaaattatggattcga 47940639  T
Q  194 ggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||  ||   ||||||| ||| ||||||| |||||||||||||| || || |||||||||||    
T  47940638 ggaaatcatggtgaatttagttaagaaccatacgaaaagcacctaagaaattgtacctaagtttt 47940574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 51789689 - 51789601
Alignment:
Q  170 actttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||||||||||||| || | ||||||||||  ||   ||||||| ||||||||||| ||||| ||||||||||| || |||||||||||    
T  51789689 actttgagaaaattatggaattgaggaaatcatggtgaatttagttaaaaaccatacgaaaatcacctaaggaattgtacctaagtttt 51789601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 243
Target Start/End: Original strand, 27670175 - 27670295
Alignment:
Q  127 ttttgcatgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaacc 222  Q
    ||||| |||||||||||||||||||||||    | ||  || ||  ||||||||||||||| || |||| |||||||  |||  ||||||| ||||||||    
T  27670175 ttttgtatgattcttaactaaaaatacatattttttgaatataaaaaactttgagaaaattatggatttaaggaaatcatgatgaatttagttaaaaacc 27670274  T
Q  223 atatgaaaagcacctaaggaa 243  Q
    ||| ||||||||| |||||||    
T  27670275 atacgaaaagcacataaggaa 27670295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 3607858 - 3607751
Alignment:
Q  137 ttcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaag 232  Q
    |||||||||||||||||||    | ||| || ||| ||||||||||||||| || ||||||||||||  |||  ||||||| ||| |||||||  |||||    
T  3607858 ttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatgatgaatttagttaagaaccatacaaaaag 3607759  T
Q  233 cacctaag 240  Q
    ||||||||    
T  3607758 cacctaag 3607751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 258
Target Start/End: Complemental strand, 14387182 - 14387019
Alignment:
Q  99 aaaacttgggtacatttctttacctattttttgcatgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgag 194  Q
    ||||||| |||||| ||| |||  | ||||| | ||| |||||||||||||||||||    | ||| || ||  ||||||||||||||| || |||||||    
T  14387182 aaaacttaggtacaattccttaggtgtttttcgtatggttcttaactaaaaatacatattttttggatataataaactttgagaaaattatggatttgag 14387083  T
Q  195 gaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||||  ||   ||||||| ||| ||||||| |||| ||| |||||||| || |||||||||||    
T  14387082 gaaatcatggtgaatttagttaagaaccatacgaaatgcatctaaggaattgtacctaagtttt 14387019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 19797110 - 19796985
Alignment:
Q  137 ttcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaattt-agctaaaaaccatatgaaaa 231  Q
    |||||||||||||||||||    | ||| || ||| |||||||| |||||| || ||||||||||||  || ||| ||| || ||||||||||| |||||    
T  19797110 ttcttaactaaaaatacatattttttggatataacaaactttgaaaaaattatggatttgaggaaatcatg-gtatttttagttaaaaaccatacgaaaa 19797012  T
Q  232 gcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||| || || |||||||||||    
T  19797011 gcacctaagaaattgtacctaagtttt 19796985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 22339102 - 22339151
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| ||||||||||||||||||||| ||| ||||||||||||||    
T  22339102 tttagttaagaaccatatgaaaagcacctaaagaattgcacctaagtttt 22339151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 5189511 - 5189636
Alignment:
Q  137 ttcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaag 232  Q
    |||||||||||||||||||    | ||| || ||| ||||||||||||||| || |||| |||||||  ||   ||||||| ||| ||||||| ||||||    
T  5189511 ttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttaaggaaatcatggtgaatttagttaagaaccatacgaaaag 5189610  T
Q  233 cacctaaggaaatgcacctaagtttt 258  Q
    || |||||||| || |||||| ||||    
T  5189611 catctaaggaattgtacctaaatttt 5189636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 243
Target Start/End: Complemental strand, 42561435 - 42561314
Alignment:
Q  126 tttttgcatgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaac 221  Q
    |||||| ||| |||||||||||||||||||    | ||| || ||| ||||||||||||||| || || ||| |||||  ||   ||||||| ||| |||    
T  42561435 tttttgtatggttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatatgaagaaatcatggtgaatttagttaagaac 42561336  T
Q  222 catatgaaaagcacctaaggaa 243  Q
    |||| |||||||||||||||||    
T  42561335 catacgaaaagcacctaaggaa 42561314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 50627173 - 50627298
Alignment:
Q  137 ttcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaag 232  Q
    |||||||||||||||||||    | ||| || ||| ||||||||||||||| || ||||||||||||  |||    ||||| ||| ||||||| ||||||    
T  50627173 ttcttaactaaaaatacatattttttggatataacaaactttgagaaaattatggatttgaggaaatcatgatatttttagttaagaaccatacgaaaag 50627272  T
Q  233 cacctaaggaaatgcacctaagtttt 258  Q
    ||  ||||||| || |||||||||||    
T  50627273 catataaggaattgtacctaagtttt 50627298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 16518352 - 16518302
Alignment:
Q  208 atttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||||| |||||||||||  ||||||||||||| || ||||||||||||||    
T  16518352 atttagttaaaaaccataccaaaagcacctaagaaattgcacctaagtttt 16518302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 26208503 - 26208577
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaa 243  Q
    ||||||||||||||| || |||||| |||||| ||   ||||||| | | ||||||| |||||||||||||||||    
T  26208503 aactttgagaaaattatggatttgaagaaattatggtgaatttagttcagaaccatacgaaaagcacctaaggaa 26208577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 39015331 - 39015256
Alignment:
Q  128 tttgcatgattcttaactaaaaataca----ttgtggttaaaacgaactttgagaaaattgtgaatttgaggaaat 199  Q
    |||| ||| ||||||||| ||||||||    ||||||||| ||||||||||||||||||| || |||||| |||||    
T  39015331 tttgtatggttcttaacttaaaatacactttttgtggttataacgaactttgagaaaattatggatttgaagaaat 39015256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 5189522 - 5189473
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  5189522 tttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 5189473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 9978170 - 9978219
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  9978170 tttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 9978219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 19204126 - 19204037
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||||||||||||||||||||||  | ||||  |||||| ||||| || ||||||||  |||  ||| ||||||| |||| |||||||||    
T  19204126 aactttgagaaaattgtgaatttatgaaaatcatgagtagtttagttagaaaccataaaaaattcacataaggaattgcatctaagtttt 19204037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 19206536 - 19206447
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    |||||||||||||||||||||||  | ||||  |||||| ||||| || ||||||||  |||  ||| ||||||| |||| |||||||||    
T  19206536 aactttgagaaaattgtgaatttatgaaaatcatgagtagtttagttagaaaccataaaaaattcacataaggaattgcatctaagtttt 19206447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 19797099 - 19797148
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  19797099 tttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 19797148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 49285093 - 49285142
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  49285093 tttagttaagaaccatacgaaaagcacctaaggaattgtacctaagtttt 49285142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 50856411 - 50856322
Alignment:
Q  172 tttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagttttatc 261  Q
    |||||||||||| || | ||||||||||  ||   ||||||||||| || |||| ||||||||||||| ||| |  ||||||||||||||    
T  50856411 tttgagaaaattatggacttgaggaaataatggtgaatttagctaagaatcatacgaaaagcacctaaagaattttacctaagttttatc 50856322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 51276788 - 51276719
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatgaaaagcaccta 238  Q
    ||||||||||||||| || ||||||||||||  | |  ||||||| ||| ||||||| ||||||||||||    
T  51276788 aactttgagaaaattatggatttgaggaaatcataatgaatttagttaagaaccatacgaaaagcaccta 51276719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 51276813 - 51276862
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||| ||||||| |||||||||||||| || || |||||||||||    
T  51276813 tttagctaagaaccatacgaaaagcacctaagaaattgtacctaagtttt 51276862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 2302479 - 2302511
Alignment:
Q  167 cgaactttgagaaaattgtgaatttgaggaaat 199  Q
    ||||||||||||||||| |||||||||||||||    
T  2302479 cgaactttgagaaaattatgaatttgaggaaat 2302511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 7124 - 7238
Alignment:
Q  133 atgattcttaactaaaaatacat----tgtggttaaaacgaactttgagaaaattgtgaatttgaggaaattgtgagtaatttagctaaaaaccatatga 228  Q
    |||||||||||||||||||| ||    | ||| || ||| ||||||||||||||| || ||||||||||||  |||  ||||||| ||| ||||||| ||    
T  7124 atgattcttaactaaaaatatatatattttggatataacaaactttgagaaaattatggatttgaggaaatcatgatgaatttagttaagaaccatacga 7223  T
Q  229 aaagcacctaaggaa 243  Q
    |||||||||||||||    
T  7224 aaagcacctaaggaa 7238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 51141 - 51230
Alignment:
Q  169 aactttgagaaaattgtgaatttgaggaaattgtgagt-aatttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||||||||||||| ||||||| |||||||  | ||| ||||||| ||| |||||||||||||| |||||||||| || |||||||||||    
T  51141 aactttgagaaaattatgaatttaaggaaatcat-agtgaatttagttaagaaccatatgaaaagtacctaaggaattgtacctaagtttt 51230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 2058 - 2107
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| |||||||| |||||||||||||||| || |||||||||||    
T  2058 tttagttaagaaccatataaaaagcacctaaggaattgtacctaagtttt 2107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 26458 - 26409
Alignment:
Q  209 tttagctaaaaaccatatgaaaagcacctaaggaaatgcacctaagtttt 258  Q
    ||||| ||| ||||||| ||||||||||||||||| || |||||||||||    
T  26458 tttagttaataaccatacgaaaagcacctaaggaattgtacctaagtttt 26409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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