View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9885_high_9 (Length: 210)
Name: NF9885_high_9
Description: NF9885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9885_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 33225372 - 33225234
Alignment:
| Q |
15 |
cagagaggagcaagttggcacatatatgtcaccttccattgaattcatatacatggcataatattttcctttatatgtaatgatccttgctaattggctt |
114 |
Q |
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| T |
33225372 |
cagagaggagcaagttggcacatatatgtcaccttccattgaattcatatacatggcataatattttcctttatatgtaatgatgcttgctaattggctt |
33225273 |
T |
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| Q |
115 |
tcaagtatcctctagtcaaggtatgtaacctattataat |
153 |
Q |
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| T |
33225272 |
tcaagtatcctctagtcaaggtatgtaacctattataat |
33225234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 36 - 192
Target Start/End: Complemental strand, 33227523 - 33227366
Alignment:
| Q |
36 |
atatatgtcaccttccattgaattcatatacatggcataatattttcctttatatgtaatgatccttgctaattggct-ttcaagtatcctctagtcaag |
134 |
Q |
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| T |
33227523 |
atatatgtcaccttctatttaattcatatgcatggcataatattttcctttatatgtaatgctccttgctaaaagtctcctctcttatggtctagtcaag |
33227424 |
T |
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| Q |
135 |
gtatgtaacctattataatttaaggctgtggagttgcttattgcattaggaaaatatt |
192 |
Q |
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| T |
33227423 |
gtatgtaacctattataatttcaggttgtggagttgtgtattttattaggaaaatatt |
33227366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 33224496 - 33224450
Alignment:
| Q |
146 |
attataatttaaggctgtggagttgcttattgcattaggaaaatatt |
192 |
Q |
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| T |
33224496 |
attataatttaaggctgtggagttgcttattgcattaggaaaatatt |
33224450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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