View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9885_low_11 (Length: 239)
Name: NF9885_low_11
Description: NF9885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9885_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 9559921 - 9559699
Alignment:
| Q |
1 |
caacattcagattttgtcacagcataacatgatgtctcttcagtaatatgaatcaatcattccaactctaaacagtcttgaattcagtttctataaaagc |
100 |
Q |
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| T |
9559921 |
caacattcagattttgtcacaacataacatgatgtctcttcagtaatatgaatcaatcattccaactctaaacagtcttgaattcagtttctataaaagc |
9559822 |
T |
|
| Q |
101 |
acaatgaatactacatagcaatgaggcaaaccaaaccagaccaatccacataagtctgaaaagtactcttaagtacgtaacaatgtaccacacactttct |
200 |
Q |
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| T |
9559821 |
acaatgaatactacatagcaatgaggcaaaccaaaccagaccaatccacataagtctgaaaagtactcttaagtacgtaacaatgtaccacacactttct |
9559722 |
T |
|
| Q |
201 |
aacatgaagacagtagtaataaa |
223 |
Q |
| |
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||||| ||||||||||||||||| |
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| T |
9559721 |
aacatcaagacagtagtaataaa |
9559699 |
T |
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Back To:
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Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 19789481 - 19789312
Alignment:
| Q |
23 |
cataacatgatgtctcttcagtaatatgaatcaatcattccaactctaaacagtcttgaattcagtttctataaaagcacaatgaatactacatagcaat |
122 |
Q |
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|||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||| | || |||||||| ||| |||| |
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| T |
19789481 |
catatcatgacgtctcttcagtaatatgaatcaataattccaactctaaacagtctt-aattcagtttctctaacaacataatgaatat---ataacaat |
19789386 |
T |
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| Q |
123 |
gaggcaaaccaaaccagaccaatccacataagtctgaaaagtactcttaagtacgtaacaatgtaccacacact |
196 |
Q |
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| T |
19789385 |
caggcaaaccaaaccagaccattccacataagtctgaaaagtactcttaagtaaataacaatgtaccacacact |
19789312 |
T |
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