View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9885_low_12 (Length: 236)
Name: NF9885_low_12
Description: NF9885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9885_low_12 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 8431448 - 8431313
Alignment:
| Q |
88 |
tttcttcttctcacacacatgaagggtttcattggcgatgattatgtacattgaaatcttatcttattttannnnnnnnnaaacttcaactgctgtgctt |
187 |
Q |
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| T |
8431448 |
tttcttcttctcacacacatgaaaggtttcattggcgatgattatgtacattgaaatcttatctttttttttttatttttaaacttcaactgctgtgctt |
8431349 |
T |
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| Q |
188 |
ttcgtgaaattccttcaaacatctattggttcagag |
223 |
Q |
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| T |
8431348 |
ttcgtgaaattccttcaaacatctattggttcagag |
8431313 |
T |
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Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 8431583 - 8431501
Alignment:
| Q |
8 |
tttttaaatttgtaatctgcattctgttgctctctataacttcttgtactcctaatttcaattagtgttaagatttgtcattt |
90 |
Q |
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| T |
8431583 |
tttttaaatttgtaatctgcattctgttgctctctataacttcttgtactcctaatttcaattagtgttaagatttgtcattt |
8431501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 8434540 - 8434482
Alignment:
| Q |
8 |
tttttaaatttgtaatctgcattctgttgctctctataacttcttgtactcctaatttc |
66 |
Q |
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| T |
8434540 |
tttttaaatttgtaatttgtaatctgttgttctttataacttcttgtactcttaatttc |
8434482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 75894 - 75977
Alignment:
| Q |
8 |
tttttaaatttgtaatctgcattctg-ttgctctctataacttcttgtactcctaatttcaattagtgttaagatttgtcattt |
90 |
Q |
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| T |
75894 |
tttttaaattcgtaatttgtaatctggttgttctttataacttcttgtactcttaatttcaattaatgataagatttatcattt |
75977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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