View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9885_low_3 (Length: 382)
Name: NF9885_low_3
Description: NF9885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9885_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 11 - 367
Target Start/End: Complemental strand, 7094572 - 7094213
Alignment:
| Q |
11 |
caaaggggtgacaaagaagtgaagatgctaaaatatggtcaaaagtaaagtcaaggggacaacttggagttgggggaccaaatcctccacttagcttcta |
110 |
Q |
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| T |
7094572 |
caaaggggtgacaaagaagtgaagatgctaaaatatggtcaaaagtaaagtcaaggggacaacttggagttgggggaccaaatcctccacttagcttcta |
7094473 |
T |
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| Q |
111 |
tannnnnnnncttgtgaccaaacatatgtaagcatagaatcaatggaggggtaccctccaccatccataacctaaaaaatttcttcccattttcccatga |
210 |
Q |
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| T |
7094472 |
tattttttttcttgtgaccaaacatatgtaagcatagaatcaatggaggggtaccctccaccatccataacctaaaaaatttcttcccattttcccatga |
7094373 |
T |
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| Q |
211 |
ttgtcctcatacatggatcccaagttccccatccaca---cttatttaatatgaaggctttgaaaataaaggcatacaactatgatagtataaattatta |
307 |
Q |
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| T |
7094372 |
ttgtcctcatacatggatcccaagttccccatccacacttcttatttaatatgaaggctttgaaaataaaggcatacaactatgatagtataaattatta |
7094273 |
T |
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| Q |
308 |
tgtcaaattgtacctttcacctaaaaattattatagtttagtaatcatgcccaagttgct |
367 |
Q |
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| T |
7094272 |
tgtcaaattgtacctttcacctaaaaattattatagtttagtaatcatgcccaagttgct |
7094213 |
T |
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