View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9885_low_8 (Length: 250)
Name: NF9885_low_8
Description: NF9885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9885_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 4823901 - 4824075
Alignment:
| Q |
1 |
aaagagaagttgaagtatgctacaattggaggagcctcttactacttccttcagttgctcatactactccaaactgtgagtaaatagtcatctggtcttt |
100 |
Q |
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| T |
4823901 |
aaagagaagttgaagtatgctacaattggaggagcctcttactacttccttcagttgctcatactactccaaactgtgagtaaatagtcatctggtcctt |
4824000 |
T |
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| Q |
101 |
aaatatgtgagatagcgtcattatagtctttgaatgaatcgaaacttaaacattcctaagtgtgttttctggacc |
175 |
Q |
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| T |
4824001 |
aaatatgtgagatagcgtcattatagtctttgaatgaatcgaaacttaaacattcctaagtgtgttttctggacc |
4824075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 4824363 - 4824416
Alignment:
| Q |
176 |
ttcctgtcagttacttatagaagtgagtaaacactccaaaattggtacattgaa |
229 |
Q |
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| T |
4824363 |
ttcctgtcagtttcttatagaagtgagtaaacactccaaaattggtacattgaa |
4824416 |
T |
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