View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9886_high_1 (Length: 648)
Name: NF9886_high_1
Description: NF9886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9886_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 278 - 638
Target Start/End: Complemental strand, 37571773 - 37571424
Alignment:
| Q |
278 |
tagttcaatgatattcacgttaataagtgaaatttgatttactataaaccaaaacaagaataataaaagaatgaaatttgactaacttatccttgaaaaa |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37571773 |
tagttcaatgatattcacgttaataagtgaaatttgatt-actataaaccaaaacaagaataataaaagaatgaaatttgactaacttatctttgaaacg |
37571675 |
T |
|
| Q |
378 |
taagtgatactctctctacaagatattttttcagttccctacttttattaatcaaataattgannnnnnn---aacatatgtataattttacatttttga |
474 |
Q |
| |
|
| | || || || |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
37571674 |
gagggagta-----------agtgatattttcagttccctacttttattaatcaaataattgattttttttttaacatat--ataattttacatttttga |
37571588 |
T |
|
| Q |
475 |
atcaaatcaaatttgaaatgtaatcttctttgatctttaagagtaaagttactgtccaccagacagtttgtctgtccaaaatatggtgtcctgcccatta |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37571587 |
atcaaatcaaatttgaaatgtaatcttctttgatctttaagagtaaagttactgtccaccagacagtttgtctgtccaaaatatggtgtcctgcccatta |
37571488 |
T |
|
| Q |
575 |
cccaaataagctcatctaaacagtagctgataaatttccaagaaatcctatcataggccctatg |
638 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37571487 |
cccaaataagctcatctaaacagtagctgataaatttccaagaaatcctatcatatgccctatg |
37571424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 27 - 178
Target Start/End: Complemental strand, 37571989 - 37571837
Alignment:
| Q |
27 |
gtaagtgcttaatgacttatgcgttttaacttaatgtttaatgtt-gttttatggttactaattaagtttctttctgttatctgagtatcttcattgtat |
125 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37571989 |
gtaagtgcttaatgacttatgcgttttaaattaatgtttaatgtttgttttatggttactaattaagtttctttctgttatctgagtatcttcattgtat |
37571890 |
T |
|
| Q |
126 |
ttctggatgtttaactttaattagtgactcttaattttcataacaataaagta |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37571889 |
ttctggatgtttaactttaattagtgactcttaattttcataacaataaagta |
37571837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 37571840 - 37571796
Alignment:
| Q |
202 |
agtactctcaggttatattaaattccttttgtttttatttgctgga |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
37571840 |
agtactctcaggttatattaaattccttttg-ttttatttgatgga |
37571796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University