View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9886_high_4 (Length: 525)
Name: NF9886_high_4
Description: NF9886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9886_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 207 - 451
Target Start/End: Complemental strand, 38673301 - 38673057
Alignment:
| Q |
207 |
aatgttgttcttcgttacttctttaataaaattttaaacgnnnnnnnncttctaataaataatcaatttcgtcactaaacttccactctatcatcaattt |
306 |
Q |
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| T |
38673301 |
aatgttgttcttagttacttctttaataaaattttaaacgttttttttcttctaataaacaatcaatttcgtcactaaacttccactctatcatcaattt |
38673202 |
T |
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| Q |
307 |
agactctaagctattataatcaactaaaatgatcataagctcattcaaaaatgataaatgggcacaattttttaaacacaatacagacaccactatataa |
406 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38673201 |
agactctaagctactataatcaactaaaatgatcataagctcattcaaaaatgataaatgaacacaattttttaaacacaatacagacaccactatataa |
38673102 |
T |
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| Q |
407 |
ttacagtgtatttcccatttgtttacactgttactttatactcta |
451 |
Q |
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||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
38673101 |
ttataatgtatttcccatttgtttacactgttactttatactcta |
38673057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 38673487 - 38673371
Alignment:
| Q |
17 |
actttgtatctgggctggaagaattcaacaaaatgttataagatatgactaactnnnnnnnnnnnnnnnctaatatgagaatgtgcctcggtttatatcc |
116 |
Q |
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| T |
38673487 |
actttgtatctgggctggaagaattcaacaaaatgttataagatatgactaact----aaaaaaaaaaactaatatgagaatgtgcctcggtttatatcc |
38673392 |
T |
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| Q |
117 |
tcttgattgcactgtttggaa |
137 |
Q |
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| T |
38673391 |
tcttgattgcactgtttggaa |
38673371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 355 - 450
Target Start/End: Complemental strand, 11916649 - 11916552
Alignment:
| Q |
355 |
aaatgataaatgggcacaattttttaaacacaatacagacaccactatataattacagtgtatttccc--atttgtttacactgttactttatactct |
450 |
Q |
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| T |
11916649 |
aaatgataaattgacacatttttttagacacaatacagacaccaccgtataattataaggtatttcccttttttttttacactgttactttatactct |
11916552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 352 - 451
Target Start/End: Original strand, 15888758 - 15888857
Alignment:
| Q |
352 |
caaaaatgataaatgggcacaattttttaaacacaatacagacaccactatataattacagtgtatttcccatttgtttacactgttactttatactcta |
451 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||| ||||||||||||||| |
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| T |
15888758 |
caaaaatgataaatgaacacaattttttaaacacaatacagacaccactatataattatacggtattttccatttgtttacacttttactttatactcta |
15888857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 355 - 446
Target Start/End: Original strand, 43187124 - 43187215
Alignment:
| Q |
355 |
aaatgataaatgggcacaattttttaaacacaatacagacaccactatataattacagtgtatttcccatttgtttacactgttactttata |
446 |
Q |
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||||||||||||| ||||||||||||| || ||||||||||||||| |||||||| | | ||||| ||||| ||||||||||||||||||| |
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| T |
43187124 |
aaatgataaatggacacaattttttaagcataatacagacaccactgtataattatacggaatttctcatttctttacactgttactttata |
43187215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 355 - 450
Target Start/End: Complemental strand, 9372965 - 9372872
Alignment:
| Q |
355 |
aaatgataaatgggcacaattttttaaacacaatacagacaccactatataattacagtgtatttcccatttgtttacactgttactttatactct |
450 |
Q |
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||||||||||||| |||| | ||||| |||||||||||||||||| |||||||| | ||||||||| ||| ||||||||||||||||||||||| |
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| T |
9372965 |
aaatgataaatggacaca-tattttagacacaatacagacaccaccgtataattatacggtatttccctttt-tttacactgttactttatactct |
9372872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 41764240 - 41764198
Alignment:
| Q |
356 |
aatgataaatgggcacaattttttaaacacaatacagacacca |
398 |
Q |
| |
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|||||||||||| ||||| |||| ||||||||||||||||||| |
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| T |
41764240 |
aatgataaatggacacaaattttcaaacacaatacagacacca |
41764198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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