View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9886_high_7 (Length: 248)
Name: NF9886_high_7
Description: NF9886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9886_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 5738885 - 5738664
Alignment:
| Q |
17 |
agttttaactttaaacctcatttaatatgattgaaaatacatggaaaattcccaaatatgattcagacatacaaaagttttccaccataataaaacagta |
116 |
Q |
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| T |
5738885 |
agttttaactttaaacctcatttaatatgattgaaaatacatggaaaattcccaactatgattcagacatacaaaagttttccaccataataaaacagta |
5738786 |
T |
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| Q |
117 |
cacaagttgactctggatttttaggtttgtccccattaaatttaggccacacaaagtactccaattggttgagaaaataaatttatacatccccacaaca |
216 |
Q |
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| T |
5738785 |
cagaagttgactctggatttttaggtttgtccccattaaatttaggccacacaaagtactccaattggttgagaaaataaatttatacatccccacaaca |
5738686 |
T |
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| Q |
217 |
cagtgatggacaacgacctttg |
238 |
Q |
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| T |
5738685 |
cactgatggacaacgacctttg |
5738664 |
T |
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