View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9886_high_9 (Length: 239)
Name: NF9886_high_9
Description: NF9886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9886_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 35127965 - 35128194
Alignment:
| Q |
1 |
gccaaattttgtaggtgcctgatttcaattagtgtggcttcatcgttgtgcattacaagtgttcaagc-ttcgaataggcaagttagttaatggcgtgtt |
99 |
Q |
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| T |
35127965 |
gccaaattttgtaggtgcctgatttcaattagtgtggcttcatcgttgtgcattacaagtgttcaagccttagaataggcaagttagttaatggcgtgtt |
35128064 |
T |
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| Q |
100 |
ggatggttatagacaaaat-----ggtatgagttacgaagagattatcttgaggagaagacaaaaagatgaaggacaagatggataaataactcccatta |
194 |
Q |
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| T |
35128065 |
ggatggttatagacaaattaaattggtatgagttacgaagagattgtcttgaggagaagacaaaaagatgaaggacaagatggataaataactcccatta |
35128164 |
T |
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| Q |
195 |
cacaat-actgctatacaatatgtctaaag |
223 |
Q |
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|||||| ||||||||||||||||| ||||| |
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| T |
35128165 |
cacaataactgctatacaatatgtataaag |
35128194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 35150140 - 35150218
Alignment:
| Q |
83 |
ttagttaatggcgtgttggatggttatagacaaaatggtatgagtta-cgaagagattatcttgaggagaagacaaaaa |
160 |
Q |
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|||||| |||| |||||||| |||||||||||| ||||||||||||| || || || || |||||||||||||||||| |
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| T |
35150140 |
ttagttgatggtgtgttggagggttatagacaagatggtatgagttatggaggatataattttgaggagaagacaaaaa |
35150218 |
T |
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