View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9886_low_2 (Length: 619)
Name: NF9886_low_2
Description: NF9886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9886_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 18 - 606
Target Start/End: Complemental strand, 48167195 - 48166607
Alignment:
| Q |
18 |
agaaagaccagcaagttctcgagtgaaagaatcagaactagaggtgttactctttgtcaaatgcttgatggccacaacttgaccacttggcaaaacacct |
117 |
Q |
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| T |
48167195 |
agaaagaccagcaagttctcgagtgaaagaatcagaactagaggtgttactctttgtcaaatgcttgatggccacaacttgaccacttggcaaaacacct |
48167096 |
T |
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| Q |
118 |
ctaaacacttcacctgcactcccgcgtccaaggtttatcttttcattttcaaaattcatggcattttcaatttcagtttttgtgaaccagtaaagtccag |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48167095 |
ctaaacacttcacccgcactcccgcgtccaaggtttatcttttcattttcaaaattcatggcattttcaatttcagtttttgtgaaccagtaaagtccag |
48166996 |
T |
|
| Q |
218 |
accaagtagctatctgtttcaactggacgtgcttcttaacaggcttcttctttgatacacattttaccagaaaagcaataatcaataatgctaagatagc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48166995 |
accaagtagctatctgtttcaactggacgtgcttcttaacaggcttcttctttgatacacattttaccagaaaagcaataatcaataatgctaagatagc |
48166896 |
T |
|
| Q |
318 |
tatcaccaacattgccaacacaagtttcttcattgatgattctaggttcacaaaacgaaattatgtcaatttcattgttagtttatttatgacagtctac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48166895 |
tatcaccaacattgccaacacaagtttcttcattgatgattctaggttcacaaaacaaaattatgtcaatttcattgttagtttatttatgacaatctac |
48166796 |
T |
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| Q |
418 |
accattattagtggtgtatatttttcgtcnnnnnnnntcgtgaaatagactattaaacggacttaccaaaaagtcaggtcaaaccttaaaaatgagccta |
517 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48166795 |
accattattagtggtgtatatttttcgtcaaaaaaaatcgtgaaatagactattaaacggacttaccaaaaagtcaggtcaaaccttaaaaatgagccta |
48166696 |
T |
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| Q |
518 |
tggcagactaataggacagattgaagcctaacattttcaaagcaagtcatgttcagcctagcaaagtttaacctagtctattttcacct |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48166695 |
tggcagactaataggacagattgaagcctaacattttcaaagtaagtcatgttcagcctagcaaagtttaacctagtctattttcacct |
48166607 |
T |
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