View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9886_low_3 (Length: 583)
Name: NF9886_low_3
Description: NF9886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9886_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 1 - 566
Target Start/End: Original strand, 54774583 - 54775148
Alignment:
| Q |
1 |
atggcaagcaaaccatttttaatagcaagtgaatgaacctgtctaccagtgtacacaaacacatcacttgtcaatgcacttagaacactagtgagagcaa |
100 |
Q |
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| T |
54774583 |
atggcaagcaaaccatttttaatagcaagtgaatgaacctgtctaccagtgtacacaaacacatcacttgtcaatgcacttagaacactagtgagagcaa |
54774682 |
T |
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| Q |
101 |
actcattttgaatctcttcctcacgccgcataagttcaaaaacctcaaccgccttatcagcaatatcactagaagcatacccagaaatcatagtagccca |
200 |
Q |
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| T |
54774683 |
actcattttgaatctcttcctcacgccgcataagttcaaaaacctcaaccgccttatcagcaatatcactagaagcatacccagaaatcatagtagccca |
54774782 |
T |
|
| Q |
201 |
agaaaccgtatttctctcaggcattctgtcaaacagtttacgagcatcgaaaacaaaaccagttttacaatacatattaagaagagaacttcccacatat |
300 |
Q |
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| T |
54774783 |
agaaaccgtatttctctcaggcattctgtcaaacagtttacgagcatcgaaaacaaaaccagttttacaatacatattaagaagagaacttcccacatat |
54774882 |
T |
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| Q |
301 |
acatcaccagaacatccagtcttaactgcaacagaatgagcttgttttccggctactacgtcagaaagattagaagcagccaagaaaacaccggcgagtg |
400 |
Q |
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| T |
54774883 |
acatcaccagaacatccagtcttaactgcaacagaatgagcttgttttccggctactacgtcagaaagattagaagcagccgagaaaacaccggcgagtg |
54774982 |
T |
|
| Q |
401 |
tatgggcattagggatcacattattggcacgcatcatacgacgaaagaggcttatagcgaaggaagaagatgaagaggaatggttttgagagaaagcgtt |
500 |
Q |
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| T |
54774983 |
tatgggcattagggatcacattattggcacgcatcatacgacgaaagaggcttatagcgaaggaagaagatgaagaggaatggttttgagagaaagcgtt |
54775082 |
T |
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| Q |
501 |
gatgagagagttccatgaaacgtcgtctttgtcgttgtcgtttatagaatcaaagagggttaaagc |
566 |
Q |
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| T |
54775083 |
gatgagagagttccatgaaacgtcgtctttgtcgttgtcgtttatagaatcaaagagggttaaagc |
54775148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 30163389 - 30163352
Alignment:
| Q |
198 |
ccaagaaaccgtatttctctcaggcattctgtcaaaca |
235 |
Q |
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| T |
30163389 |
ccaagaaaccacatttctctcaggcattctgtcaaaca |
30163352 |
T |
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