View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9886_low_5 (Length: 521)
Name: NF9886_low_5
Description: NF9886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9886_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 6 - 504
Target Start/End: Complemental strand, 25589684 - 25589186
Alignment:
| Q |
6 |
agaagcaaagggagaacaacattaaataggattaccagaacagttgaatctgaagagaatatctaataccaattttgaggacagtaaaaaatcacttaat |
105 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25589684 |
agaaacaaagagagaacaacattaaataggattaccagaagagttgaatctgaagagaatatctaataccaattttgaggacagtaaaaaatcacttaat |
25589585 |
T |
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| Q |
106 |
caggaaatcataagaaactcatcttctgtgtcagaattagaaaatctatttagattgctttatggatgaattttttacaattatataacgtatcaactgc |
205 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25589584 |
caggaaatcataagaaactcatcttccgtgtcagaattagaaaatctatttagattgctttatggatgaattttttacaattatataacgtatcaactgc |
25589485 |
T |
|
| Q |
206 |
tacgccagcataccaatctcctttaccatcaatttttcgcaaatttgttgccattnnnnnnnngaaaatcgcaaatttagccacaatatgttagtgtatg |
305 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
25589484 |
tacgccagcataccaatttcctttaccatcaatttttcgcaaatttgttgccattaaaaaaaagaaaattgcaaatttagccacaatatgttagtgtatg |
25589385 |
T |
|
| Q |
306 |
atatctgaatcacctgtaatggagtgacgccaccagcgatgtcccaatcatttttatagtcaggaataatgtacttaggcgatgcaccagataaaaccat |
405 |
Q |
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| T |
25589384 |
atatctgaatcacctgtaatggagtgacgccaccagcgatgtcccaatcatttttatagtcaggaataatgtacttaggcgatgcaccagataaaaccat |
25589285 |
T |
|
| Q |
406 |
ggcagatatagctgataaatgagaattcctaggaagaatcagatattctcccggtgaacaggttgccattattgctgcctggactccacaagtagtacc |
504 |
Q |
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| T |
25589284 |
ggcagatatagctgataaatgagaattcctaggaagaatcagatattctcccggtgaacaggttgccattattgctgcctggactccacaagtagtacc |
25589186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 6 - 504
Target Start/End: Complemental strand, 25599336 - 25598838
Alignment:
| Q |
6 |
agaagcaaagggagaacaacattaaataggattaccagaacagttgaatctgaagagaatatctaataccaattttgaggacagtaaaaaatcacttaat |
105 |
Q |
| |
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|||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25599336 |
agaaacaaagagagaacaacattaaataggattaccagaagagttgaatctgaagagaatatctaataccaattttgaggacagtaaaaaatcacttaat |
25599237 |
T |
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| Q |
106 |
caggaaatcataagaaactcatcttctgtgtcagaattagaaaatctatttagattgctttatggatgaattttttacaattatataacgtatcaactgc |
205 |
Q |
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| T |
25599236 |
caggaaatcataagaaactcatcttccgtgtcagaattagaaaatctatttagattgctttatggatgaattttttacaattatataacgtatcaactgc |
25599137 |
T |
|
| Q |
206 |
tacgccagcataccaatctcctttaccatcaatttttcgcaaatttgttgccattnnnnnnnngaaaatcgcaaatttagccacaatatgttagtgtatg |
305 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
25599136 |
tacgccagcataccaatttcctttaccatcaatttttcgcaaatttgttgccattaaaaaaaagaaaattgcaaatttagccacaatatgttagtgtatg |
25599037 |
T |
|
| Q |
306 |
atatctgaatcacctgtaatggagtgacgccaccagcgatgtcccaatcatttttatagtcaggaataatgtacttaggcgatgcaccagataaaaccat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25599036 |
atatctgaatcacctgtaatggagtgacgccaccagcgatgtcccaatcatttttatagtcaggaataatgtacttaggcgatgcaccagataaaaccat |
25598937 |
T |
|
| Q |
406 |
ggcagatatagctgataaatgagaattcctaggaagaatcagatattctcccggtgaacaggttgccattattgctgcctggactccacaagtagtacc |
504 |
Q |
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| T |
25598936 |
ggcagatatagctgataaatgagaattcctaggaagaatcagatattctcccggtgaacaggttgccattattgctgcctggactccacaagtagtacc |
25598838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 311 - 505
Target Start/End: Complemental strand, 25584538 - 25584344
Alignment:
| Q |
311 |
tgaatcacctgtaatggagtgacgccaccagcgatgtcccaatcatttttatagtcaggaataatgtacttaggcgatgcaccagataaaaccatggcag |
410 |
Q |
| |
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||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| ||||| |||||||||| |
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| T |
25584538 |
tgaatcacctgtaatggcgtgacaccaccagcgatgtcccagtcatttttatagtcaggaacaatgtacttaggcactgcaccggataataccatggcag |
25584439 |
T |
|
| Q |
411 |
atatagctgataaatgagaattcctaggaagaatcagatattctcccggtgaacaggttgccattattgctgcctggactccacaagtagtacct |
505 |
Q |
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||||||||||||||||| |||| | ||||||||| ||| ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
25584438 |
atatagctgataaatgacaatttcgaggaagaataagaaattctcctggtgaacaggttgccattattgctgcctgaatcccacaagtagtacct |
25584344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 25584789 - 25584733
Alignment:
| Q |
17 |
gagaacaacattaaataggattaccagaacagttgaatctgaagagaatatctaata |
73 |
Q |
| |
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||||||||||||| ||||||||||||||| ||| || |||||||||||||||||||| |
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|
| T |
25584789 |
gagaacaacattagataggattaccagaagagtcgagtctgaagagaatatctaata |
25584733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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