View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9886_low_6 (Length: 493)
Name: NF9886_low_6
Description: NF9886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9886_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Original strand, 39838355 - 39838804
Alignment:
| Q |
18 |
tgaagaaacctttccaagtaaagaattattcccccataatatttatatatgctactaatccctcccacattattttaacaactagaatctaataaaataa |
117 |
Q |
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| T |
39838355 |
tgaagaaacctttccaagtaaagaattattcccccataatatttatatatgctactaatccctcccacattattttaacaactagaatctaataaaataa |
39838454 |
T |
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| Q |
118 |
tagaacagaatataatgttgtaaaatattcacataccaaaaacatataacattcaggactatgatttgacagtgtagacatcaaacttcaatgtcaattg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39838455 |
tagaacagaatataatgttgtaaaatattcacataccaaaaacatataacattcaggactatgatttgacagtgtacacatcaaacttcaatgtcaattg |
39838554 |
T |
|
| Q |
218 |
acacttaactcatttgatccaaacnnnnnnnntcaaagatgataagaagtttattaaactatacactttaataacagaaccaatttaacaattaaataat |
317 |
Q |
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| T |
39838555 |
acacttaactcatttgatccaaacaaaaaaaatcaaagatgataagaagtttattaaactatacactttaataacagaaccaatttaacaattaaataat |
39838654 |
T |
|
| Q |
318 |
tattgaaagagcaataactcccgcaccctatcacatgcaattctcctctatttaagcccttcaactcctcctctttattcattcaatccattactcacat |
417 |
Q |
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| T |
39838655 |
tattgaaagagcaataactcccgcaccctatcacatgcaattctcctctatttaagcccttcaactcctcctctttattcattcaatccattactcacat |
39838754 |
T |
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| Q |
418 |
tctcaattccataaaccaaacttcatcaaattctctctcaatcacaaaaa |
467 |
Q |
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| T |
39838755 |
tatcaattctataaaccaaacttcatcaaattctctctcaatcacaaaaa |
39838804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 309 - 447
Target Start/End: Original strand, 31289626 - 31289764
Alignment:
| Q |
309 |
ttaaataattattgaaagagcaataactcccgcaccctatcacatgcaattctcctctatttaagcccttcaactcctcctctttattcattcaatccat |
408 |
Q |
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||||||||||| ||||| ||||||||||||| ||||| ||||| |||||||||||| ||||||| ||||||||||||| || ||||||||| |||||| |
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| T |
31289626 |
ttaaataattaatgaaaaagcaataactcccccaccccatcacttgcaattctcctttatttaaacccttcaactccttcttcttattcattgaatccaa |
31289725 |
T |
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| Q |
409 |
tactcacattctcaattccataaaccaaacttcatcaaa |
447 |
Q |
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| T |
31289726 |
cactcacattctcaattacataaatcaaagttcatcaaa |
31289764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 31292055 - 31291958
Alignment:
| Q |
74 |
aatccctcccacattattttaacaactagaatctaataaaataatagaacagaatataatgttgtaaaatattcacataccaaaaacatataacattc |
171 |
Q |
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| T |
31292055 |
aatccctcccacgttattttaacgactagaatctaataaaataatagaacaaaatacaatgttataaaatattcgtgtaccaaaaacatacaacattc |
31291958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 348 - 447
Target Start/End: Complemental strand, 31291112 - 31291016
Alignment:
| Q |
348 |
tcacatgcaattctcctctatttaagcccttcaactcctcctctttattcattcaatccattactcacattctcaattccataaaccaaacttcatcaaa |
447 |
Q |
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|||||||||||||||||||||||||||| || ||||||||| ||||||||||||||| ||||| |||||||||| ||||||||||| ||||||||| |
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| T |
31291112 |
tcacatgcaattctcctctatttaagcctatcgactcctcct---tattcattcaatccaacactcatattctcaatttcataaaccaaagttcatcaaa |
31291016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 31288845 - 31288890
Alignment:
| Q |
126 |
aatataatgttgtaaaatattcacataccaaaaacatataacattc |
171 |
Q |
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|||| |||||||||||| ||||||||||||||| |||||||||||| |
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| T |
31288845 |
aatacaatgttgtaaaacattcacataccaaaaccatataacattc |
31288890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 31288759 - 31288803
Alignment:
| Q |
75 |
atccctcccacattattttaacaactagaatctaataaaataata |
119 |
Q |
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|||| ||||| |||||||||||||||| ||||||||||||||||| |
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| T |
31288759 |
atccttcccatattattttaacaactataatctaataaaataata |
31288803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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