View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9887_low_1 (Length: 560)
Name: NF9887_low_1
Description: NF9887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9887_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 4 - 544
Target Start/End: Original strand, 973359 - 973899
Alignment:
| Q |
4 |
gagtttggtgttaattaagagctaaattagttatggattgtaatatataggtgcatatactattataagtatatttgcatgcttttttattatatagtaa |
103 |
Q |
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| T |
973359 |
gagtttggtgttaattaagagctaaattagttatggattgtaatatataggtgcatatactattataagtatatttgcatgcttttttattatatagtaa |
973458 |
T |
|
| Q |
104 |
atgagttagtaggttgtggattatatatgtgagatatgtgttaatttgagaaaccgcaaacgatgaagcatatatatattctcattggcaagcatgctat |
203 |
Q |
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| T |
973459 |
atgagttagtaggttgtggattatatatgtgagatatgtgttaatttgagaaaccgcaaacgatgaagcatatatatattctcattggcaagcatgctat |
973558 |
T |
|
| Q |
204 |
tattttagtaaaatcctatattattatctcaatcactgcttttgtttcaaattgtataaatatttgaagcttaatatgttaagattttgattttgaatct |
303 |
Q |
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| T |
973559 |
tattttagtaaaatcctatattattatctcaatcactgcttttgtttcaaattgtataaatatttgtagcttaatatgttaagattttgattttgaatct |
973658 |
T |
|
| Q |
304 |
ctgactcaagctctagctaatgattagttgtccttacataatctagatagatttattcgtacatgctatataaagacttttaattagttagaataagaaa |
403 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
973659 |
ctgactcaagctcaagctaatgattagttgtccttacataatctagatagatttattcgtacatactatataaagacttttaattagttagaataagaaa |
973758 |
T |
|
| Q |
404 |
tttgtacaaaagttgattagtcaaaagttaagattttaatcattataagttagttacttttctcttataatcttaaacttggtgtttcttatttctttct |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
973759 |
tttgtacaaaagttgattagtcaaaagttaagattttaatcattataagttagttacttttctcttataatcttaaacttggtgtttcttatttctttct |
973858 |
T |
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| Q |
504 |
agtagattaggtaaggttatgtaagatgtgggtgattataa |
544 |
Q |
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| T |
973859 |
agtagattaggtaaggttatgtaagatgtgggtgattataa |
973899 |
T |
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